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26 matching publication(s)

Publication	Journal	Year	Score	Verdict
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity. PMID 25391375	Genome Res	2014	80	L1 80/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Accurate chromatin marks peak calling with Omnipeak. PMID 41521664	Nucleic Acids Res	2026	77	L1 77/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
The impact of haplotypes derived from Chinese pigs on genetic variation and economic traits in the Duroc breed. PMID 41131451	Genet Sel Evol	2025	—	not yet assessed
Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity. PMID 40846763	Nat Genet	2025	75	L1 75/100
Cis-Regulation of the CFTR Gene in Pancreatic Cells. PMID 40332394	Int J Mol Sci	2025	50	L1 50/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest. PMID 37277355	Nat Commun	2023	94	L1 94/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. PMID 36696508	Sci Adv	2023	50	L2 50/100
The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2. PMID 36627412	Cell Mol Life Sci	2023	59	L1 59/100
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas. PMID 36134663	JCI Insight	2022	84	L1 84/100
Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells. PMID 36093058	iScience	2022	59	L1 59/100
Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution. ⚑ PMID 35977485	Cell Rep	2022	63	L1 63/100 ⚑
Dissection of multiple sclerosis genetics identifies B and CD4+ T cells as driver cell subsets. PMID 35672799	Genome Biol	2022	—	L1 No data access
TFAP2 paralogs facilitate chromatin access for MITF at pigmentation and cell proliferation genes. PMID 35580127	PLoS Genet	2022	95	L2 95/100
Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data. PMID 35473573	Genome Biol	2022	—	not yet assessed
Epigenetic loss of heterogeneity from low to high grade localized prostate tumours. PMID 34911933	Nat Commun	2021	79	L1 79/100
Reactivation of a developmentally silenced embryonic globin gene. PMID 34290235	Nat Commun	2021	85	L1 85/100
Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection. ⚑ PMID 34145026	Life Sci Alliance	2021	54	L1 54/100 ⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra. PMID 33779545	Elife	2021	100	L1 100/100
An Erg-driven transcriptional program controls B cell lymphopoiesis. PMID 32541654	Nat Commun	2020	81	L1 81/100
Prediction of condition-specific regulatory genes using machine learning. PMID 32329779	Nucleic Acids Res	2020	85	L1 85/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100