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14 matching publication(s)
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
PMID 25391375 · Genome Res · 2014
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80/100
Accurate chromatin marks peak calling with Omnipeak.
PMID 41521664 · Nucleic Acids Res · 2026
L1
77/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq.
PMID 41313685 · STAR Protoc · 2025
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85/100
Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity.
PMID 40846763 · Nat Genet · 2025
L1
75/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
L1
89/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest.
PMID 37277355 · Nat Commun · 2023
L1
94/100
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas.
PMID 36134663 · JCI Insight · 2022
L1
84/100
TFAP2 paralogs facilitate chromatin access for MITF at pigmentation and cell proliferation genes.
PMID 35580127 · PLoS Genet · 2022
L2
95/100
Epigenetic loss of heterogeneity from low to high grade localized prostate tumours.
PMID 34911933 · Nat Commun · 2021
L1
79/100
Reactivation of a developmentally silenced embryonic globin gene.
PMID 34290235 · Nat Commun · 2021
L1
85/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
L1
77/100
Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra.
PMID 33779545 · Elife · 2021
L1
100/100
An Erg-driven transcriptional program controls B cell lymphopoiesis.
PMID 32541654 · Nat Commun · 2020
L1
81/100
Prediction of condition-specific regulatory genes using machine learning.
PMID 32329779 · Nucleic Acids Res · 2020
L1
85/100