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18 matching publication(s)

Publication	Journal	Year	Score	Verdict
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues. PMID 38600112	Nat Commun	2024	93	L1 93/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PMID 36719906	PLoS Comput Biol	2023	98	L1 98/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup. PMID 35931118	J Biol Chem	2022	73	L1 73/100
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. ⚑ PMID 35584008	Microb Genom	2022	61	L1 61/100 ⚑
Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data. PMID 35473573	Genome Biol	2022	—	not yet assessed
SEAseq: a portable and cloud-based chromatin occupancy analysis suite. PMID 35193506	BMC Bioinformatics	2022	94	L1 94/100
An archaeal histone-like protein regulates gene expression in response to salt stress. PMID 34883507	Nucleic Acids Res	2021	94	L1 94/100
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells. PMID 34426512	Genome Res	2021	57	L1 57/100
Reactivation of a developmentally silenced embryonic globin gene. PMID 34290235	Nat Commun	2021	85	L1 85/100
Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening. PMID 33397809	Proc Natl Acad Sci U S A	2021	48	L1 48/100
Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma. PMID 33086062	Cell Rep	2020	59	L1 59/100
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. ⚑ PMID 32596448	Sci Adv	2020	57	L1 57/100 ⚑
Cohesion is established during DNA replication utilising chromosome associated cohesin rings as well as those loaded de novo onto nascent DNAs. PMID 32515737	Elife	2020	90	L1 90/100
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation. PMID 30561326	Elife	2018	50	L1 50/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit ⚑ PMID 27655631	Nucleic Acids Res	2016	10	L1 10/100 ⚑