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28 matching publication(s)

Publication	Journal	Year	Score	Verdict
De novo identification of CD4+ T cell epitopes. PMID 38658646	Nat Methods	2024	83	L1 83/100
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues. PMID 38600112	Nat Commun	2024	93	L1 93/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. PMID 37995291	Bioinformatics	2023	79	L1 79/100
Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning. PMID 34575658	J Pers Med	2021	86	L1 86/100
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome. PMID 34561431	Nat Commun	2021	100	L1 100/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining. PMID 33705981	Genomics Proteomics Bioinformatics	2021	79	L1 79/100
Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality. PMID 32681306	Curr Genet	2020	81	L1 81/100
The liver as an immunological barrier redefined by single-cell analysis. PMID 32176810	Immunology	2020	100	L1 100/100
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. PMID 32111252	Genome Med	2020	91	L1 91/100
Computational modeling demonstrates that glioblastoma cells can survive spatial environmental challenges through exploratory adaptation. PMID 31836713	Nat Commun	2019	100	L1 100/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Contribution of retrotransposition to developmental disorders. PMID 31604926	Nat Commun	2019	79	L1 79/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration. PMID 31492853	Nat Commun	2019	77	L1 77/100
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS). PMID 31035919	BMC Bioinformatics	2019	88	L1 88/100
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. PMID 30744683	Genome Biol	2019	97	L1 97/100
Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus. PMID 30303955	PLoS Negl Trop Dis	2018	94	L1 94/100
miRge 2.0 for comprehensive analysis of microRNA sequencing data. PMID 30153801	BMC Bioinformatics	2018	89	L1 89/100
Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells. PMID 29921844	Nat Commun	2018	96	L1 96/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Genome-wide prediction of DNase I hypersensitivity using gene expression. PMID 29051481	Nat Commun	2017	79	L1 79/100
Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding. PMID 28398514	Nucleic Acids Res	2017	77	L1 77/100
Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case. PMID 26286638	Sci Rep	2015	76	L1 76/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data. PMID 25805170	Nucleic Acids Res	2015	81	L1 81/100