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33 matching publication(s)

Publication	Journal	Year	Score	Verdict
Transcriptional landscape of repetitive elements in normal and cancer human cells. PMID 25012247	BMC Genomics	2014	76	L1 76/100
Free circular introns with an unusual branchpoint in neuronal projections. PMID 31697236	Elife	2019	99	L1 99/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Macrophages on the run: Exercise balances macrophage polarization for improved health. PMID 39476967	Mol Metab	2024	81	L1 81/100
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists. PMID 37906287	J Clin Invest	2024	95	L1 95/100
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation. PMID 37652021	Immunity	2023	83	L1 83/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets. PMID 37563310	Nat Immunol	2023	93	L1 93/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr PMID 37023414	Cancer Immunol Res	2023	94	L1 94/100
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori PMID 36645269	Microbiol Spectr	2023	93	93/100
Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance. PMID 36543858	Commun Biol	2022	100	L1 100/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation. PMID 34938960	FASEB Bioadv	2021	98	L1 98/100
Reactive astrocytes acquire neuroprotective as well as deleterious signatures in response to Tau and Aß pathology. PMID 35013236	Nat Commun	2022	84	L1 84/100
An archaeal histone-like protein regulates gene expression in response to salt stress. PMID 34883507	Nucleic Acids Res	2021	94	L1 94/100
Pathway signatures derived from on-treatment tumor specimens predict response to anti-PD1 blockade in metastatic melanoma. PMID 34654806	Nat Commun	2021	100	L1 100/100
Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development. PMID 34643182	Elife	2021	84	L1 84/100
DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data. PMID 34261540	Genome Med	2021	84	L1 84/100
Vaccine-induced ICOS+CD38+ circulating Tfh are sensitive biosensors of age-related changes in inflammatory pathway PMID 34095875	Cell Rep Med	2021	88	L1 88/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer. PMID 33890574	Elife	2021	76	L1 76/100
Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra. PMID 33779545	Elife	2021	100	L1 100/100
Gene co-expression network analysis in human spinal cord highlights mechanisms underlying amyotrophic lateral sclerosis susceptibility. PMID 33707641	Sci Rep	2021	100	L1 100/100
In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age. PMID 32898168	PLoS Biol	2020	89	L1 89/100
Synergism between IL7R and CXCR4 drives BCR-ABL induced transformation in Philadelphia chromosome-positive acute lymphoblastic leukemia. PMID 32581241	Nat Commun	2020	92	L1 92/100
PDGFRA defines the mesenchymal stem cell Kaposi's sarcoma progenitors by enabling KSHV oncogenesis in an angiogenic environment. PMID 31881074	PLoS Pathog	2019	85	L1 85/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0. PMID 31343654	Invest Ophthalmol Vis Sci	2019	94	L1 94/100
Translation affects mRNA stability in a codon-dependent manner in human cells. PMID 31012849	Elife	2019	87	L1 87/100
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100