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40 matching publication(s)

Publication	Journal	Year	Score	Verdict
Free circular introns with an unusual branchpoint in neuronal projections. PMID 31697236	Elife	2019	99	L1 99/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. PMID 38909031	Sci Data	2024	80	L1 80/100
Decoding the tumor microenvironment and molecular mechanism: unraveling cervical cancer subpopulations and prognostic signatures through scRNA-Seq and bulk RNA- PMID 38482016	Front Immunol	2024	80	L1 80/100
Transcriptomic and physiological analysis of atractylodes chinensis in response to drought stress reveals the putative genes related to sesquiterpenoid biosynth PMID 38317086	BMC Plant Biol	2024	78	L1 78/100
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation. PMID 37652021	Immunity	2023	83	L1 83/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets. PMID 37563310	Nat Immunol	2023	93	L1 93/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest. PMID 37277355	Nat Commun	2023	94	L1 94/100
Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart. PMID 37012284	Sci Rep	2023	90	L2 90/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. PMID 35047825	NAR Cancer	2022	100	L1 100/100
Reactive astrocytes acquire neuroprotective as well as deleterious signatures in response to Tau and Aß pathology. PMID 35013236	Nat Commun	2022	84	L1 84/100
Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases. PMID 34680427	Biomedicines	2021	75	L1 75/100
Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development. PMID 34643182	Elife	2021	84	L1 84/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
eVITTA: a web-based visualization and inference toolbox for transcriptome analysis. PMID 34019643	Nucleic Acids Res	2021	82	L1 82/100
Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer. PMID 33890574	Elife	2021	76	L1 76/100
Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra. PMID 33779545	Elife	2021	100	L1 100/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
Epigenome screening highlights that JMJD6 confers an epigenetic vulnerability and mediates sunitinib sensitivity in renal cell carcinoma. PMID 33634984	Clin Transl Med	2021	85	L1 85/100
Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar). PMID 33158415	Genet Sel Evol	2020	85	L1 85/100
Synergism between IL7R and CXCR4 drives BCR-ABL induced transformation in Philadelphia chromosome-positive acute lymphoblastic leukemia. PMID 32581241	Nat Commun	2020	92	L1 92/100
An Erg-driven transcriptional program controls B cell lymphopoiesis. PMID 32541654	Nat Commun	2020	81	L1 81/100
From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy. PMID 31830909	BMC Genomics	2019	88	L1 88/100
PDGFRA defines the mesenchymal stem cell Kaposi's sarcoma progenitors by enabling KSHV oncogenesis in an angiogenic environment. PMID 31881074	PLoS Pathog	2019	85	L1 85/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming. PMID 31515287	Genome Res	2019	75	L1 75/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration. PMID 31492853	Nat Commun	2019	77	L1 77/100
Translation affects mRNA stability in a codon-dependent manner in human cells. PMID 31012849	Elife	2019	87	L1 87/100
Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus. PMID 30303955	PLoS Negl Trop Dis	2018	94	L1 94/100
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarra PMID 29157210	BMC Plant Biol	2017	91	L1 91/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100