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15 matching publication(s)

Publication	Journal	Year	Score	Verdict
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Targeting the epigenome and the integrated stress response to normalize colorectal cancer subclonal plasticity and progression. PMID 41963303	Cell Death Dis	2026	68	L1 68/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses. PMID 40128415	Breast Cancer	2025	71	L1 71/100
Differential bone morphology and hypoxia activity in skeletal metastases of ER+ and ER- breast cancer. PMID 39572705	Commun Biol	2024	68	L1 68/100
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. ⚑ PMID 39418301	PLoS Comput Biol	2024	23	L1 23/100 ⚑
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. PMID 38909031	Sci Data	2024	80	L1 80/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr PMID 37023414	Cancer Immunol Res	2023	94	L1 94/100
Gene Regulatory Interactions at Lamina-Associated Domains. ⚑ PMID 36833261	Genes (Basel)	2023	31	L1 31/100 ⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑