Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100

Publications 4 Datasets 392.5k Experiments 5.7k

Explore

Filters: low ✕ Computational biology ✕ rna-seq ✕ clear all

4 matching publication(s)

Publication	Journal	Year	Score	Verdict
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. ⚑ PMID 39418301	PLoS Comput Biol	2024	23	L1 23/100 ⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100

RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.

PMID 42172220 · PLoS One · 2026

L1 63/100

Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq.

PMID 41313685 · STAR Protoc · 2025

L1 85/100

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.⚑

PMID 39418301 · PLoS Comput Biol · 2024

L1 23/100 ⚑

PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.

PMID 34093998 · Comput Struct Biotechnol J · 2021

L1 77/100