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Filters: Computational biology ✕ Reproducible only ✕ rna-seq ✕ clear all

14 matching publication(s)

Publication	Journal	Year	Score	Verdict
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. PMID 35047825	NAR Cancer	2022	100	L1 100/100
eVITTA: a web-based visualization and inference toolbox for transcriptome analysis. PMID 34019643	Nucleic Acids Res	2021	82	L1 82/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration. PMID 31492853	Nat Commun	2019	77	L1 77/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0. PMID 31343654	Invest Ophthalmol Vis Sci	2019	94	L1 94/100
Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus. PMID 30303955	PLoS Negl Trop Dis	2018	94	L1 94/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100