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19 matching publication(s)

Publication	Journal	Year	Score	Verdict
A comparative study of techniques for differential expression analysis on RNA-Seq data. PMID 25119138	PLoS One	2014	58	L1 58/100
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.). PMID 24598808	PLoS One	2014	58	L1 58/100
HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis. PMID 24475057	PLoS One	2014	66	L1 66/100
Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color. PMID 24400075	PLoS One	2014	74	L1 74/100
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. PMID 23951250	PLoS One	2013	67	L1 67/100
Combining evidence of preferential gene-tissue relationships from multiple sources. PMID 23950964	PLoS One	2013	53	L1 53/100
Optimal scaling of digital transcriptomes. PMID 24223126	PLoS One	2013	67	L1 67/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Investigating epigenetic biomarkers of age, sex, and disease in captive South African cheetahs (Acinonyx jubatus jubatus). PMID 41528985	PLoS One	2026	58	L1 58/100
Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni). PMID 41490125	PLoS One	2026	69	L1 69/100
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage. PMID 38295140	PLoS One	2024	71	L1 71/100
Gene module regulation in dilated cardiomyopathy and the role of Na/K-ATPase. ⚑ PMID 35901050	PLoS One	2022	55	L1 55/100 ⚑
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Evaluation of classification and forecasting methods on time series gene expression data. PMID 33156855	PLoS One	2020	74	L1 74/100
Unveiling prognostics biomarkers of tyrosine metabolism reprogramming in liver cancer by cross-platform gene expression analyses. ⚑ PMID 32542016	PLoS One	2020	51	L1 51/100 ⚑
RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment. PMID 31978147	PLoS One	2020	71	L1 71/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Gene-Expression Profiling Suggests Impaired Signaling via the Interferon Pathway in Cstb-/- Microglia. ⚑ PMID 27355630	PLoS One	2016	54	54/100 ⚑
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100