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35 matching publication(s)

Publication	Journal	Year	Score	Verdict
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Wireless sensor network design with reliable and long network lifetime. PMID 41981015	Sci Rep	2026	65	L1 65/100
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases. PMID 41719583	Database (Oxford)	2026	50	L1 50/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm. ⚑ PMID 41499218	Brief Bioinform	2026	53	L1 53/100 ⚑
Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data. PMID 41458999	Front Bioinform	2025	64	L1 64/100
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material. PMID 41029822	J Transl Med	2025	67	L1 67/100
Interpretable and integrative analysis of single-cell multiomics with scMKL. PMID 40770488	Commun Biol	2025	65	L1 65/100
scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification. PMID 40501071	Brief Bioinform	2025	62	L1 62/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO. PMID 39569206	Patterns (N Y)	2024	63	L1 63/100
Rfam 15: RNA families database in 2025. PMID 39526405	Nucleic Acids Res	2025	68	L1 68/100
A platelet-related signature for predicting the prognosis and immunotherapy benefit in bladder cancer based on machine learning combinations. ⚑ PMID 39280688	Transl Androl Urol	2024	51	L1 51/100 ⚑
Reducing language barriers, promoting information absorption, and communication using fanyi. PMID 39039634	Chin Med J (Engl)	2024	67	L1 67/100
SGCP: a spectral self-learning method for clustering genes in co-expression networks. ⚑ PMID 38956463	BMC Bioinformatics	2024	51	L1 51/100 ⚑
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data. PMID 37994351	F1000Res	2023	67	L1 67/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. PMID 37847658	Bioinformatics	2023	67	L1 67/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. PMID 37478378	Brief Bioinform	2023	60	L1 60/100
A global database for modeling tumor-immune cell communication. PMID 37438390	Sci Data	2023	66	L1 66/100
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis. ⚑ PMID 36725967	Sci Rep	2023	74	L1 74/100 ⚑
GeMI: interactive interface for transformer-based Genomic Metadata Integration. PMID 35657113	Database (Oxford)	2022	64	L1 64/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data. PMID 34927097	STAR Protoc	2021	50	L1 50/100
Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models. PMID 34858485	Front Genet	2021	62	L1 62/100
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA PMID 34547062	Vavilovskii Zhurnal Genet Selektsii	2021	62	L1 62/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. PMID 34001188	Genome Biol	2021	73	L1 73/100
Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data. PMID 33575569	NAR Genom Bioinform	2019	61	L1 61/100
Evaluation of classification and forecasting methods on time series gene expression data. PMID 33156855	PLoS One	2020	74	L1 74/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets. PMID 32256520	Front Genet	2020	50	L1 50/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment. PMID 31978147	PLoS One	2020	71	L1 71/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
SMAC, a computational system to link literature, biomedical and expression data. PMID 31324861	Sci Rep	2019	50	L1 50/100
A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases. PMID 31290545	Database (Oxford)	2019	62	L1 62/100
MZPAQ: a FASTQ data compression tool. PMID 31171931	Source Code Biol Med	2019	58	L1 58/100
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data. PMID 31110304	Sci Rep	2019	73	L1 73/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100