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83 matching publication(s)

Publication	Journal	Year	Score	Verdict
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells. PMID 34426512	Genome Res	2021	57	L1 57/100
Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis. ⚑ PMID 34335581	Front Immunol	2021	63	L1 63/100 ⚑
Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies. PMID 34107850	Bioengineered	2021	55	L1 55/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. PMID 34001188	Genome Biol	2021	73	L1 73/100
Construction and Validation of an Immune Infiltration-Related Gene Signature for the Prediction of Prognosis and Therapeutic Response in Breast Cancer. ⚑ PMID 33986754	Front Immunol	2021	51	L1 51/100 ⚑
Cell-Type-Specific Gene Modules Related to the Regional Homogeneity of Spontaneous Brain Activity and Their Associations With Common Brain Disorders. PMID 33958982	Front Neurosci	2021	59	L1 59/100
GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses. PMID 33758032	mSystems	2021	70	L1 70/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Evaluation of classification and forecasting methods on time series gene expression data. PMID 33156855	PLoS One	2020	74	L1 74/100
Prediction of prognostic signatures in triple-negative breast cancer based on the differential expression analysis via NanoString nCounter immune panel. PMID 33138797	BMC Cancer	2020	72	L1 72/100
Metabolic profiling during malaria reveals the role of the aryl hydrocarbon receptor in regulating kidney injury. PMID 33021470	Elife	2020	62	L1 62/100
A crowdsourced set of curated structural variants for the human genome. PMID 32559231	PLoS Comput Biol	2020	71	L1 71/100
In vivo microscopy reveals macrophage polarization locally promotes coherent microtubule dynamics in migrating cancer cells. PMID 32665556	Nat Commun	2020	50	L1 50/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments. ⚑ PMID 32093613	BMC Genomics	2020	62	L1 62/100 ⚑
A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated ⚑ PMID 32019526	BMC Plant Biol	2020	62	L1 62/100 ⚑
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
PulmonDB: a curated lung disease gene expression database. ⚑ PMID 31949184	Sci Rep	2020	53	L1 53/100 ⚑
Transcriptomic Adjustments of Staphylococcus aureus COL (MRSA) Forming Biofilms Under Acidic and Alkaline Conditions. ⚑ PMID 31681245	Front Microbiol	2019	73	L1 73/100 ⚑
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Core transcriptional signatures of phase change in the migratory locust. ⚑ PMID 31292921	Protein Cell	2019	60	L1 60/100 ⚑
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID 31164912	Plant Methods	2019	59	L1 59/100
Transcriptome maps of general eukaryotic RNA degradation factors. PMID 31135339	Elife	2019	60	L1 60/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
Integrating herbarium specimen observations into global phenology data systems. PMID 30937223	Appl Plant Sci	2019	60	L1 60/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples. ⚑ PMID 29221171	Oncotarget	2017	73	73/100 ⚑
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Wide-Open: Accelerating public data release by automating detection of overdue datasets. PMID 28594819	PLoS Biol	2017	74	L1 74/100
Newborn sex-specific transcriptome signatures and gestational exposure to fine particles: findings from the ENVIRONAGE birth cohort. PMID 28583124	Environ Health	2017	71	L1 71/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100