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17 matching publication(s)

Publication	Journal	Year	Score	Verdict
TEMP: a computational method for analyzing transposable element polymorphism in populations. PMID 24753423	Nucleic Acids Res	2014	61	L1 61/100
Nucleosome regulatory dynamics in response to TGFβ. PMID 24771338	Nucleic Acids Res	2014	59	L1 59/100
Vespucci: a system for building annotated databases of nascent transcripts. PMID 24304890	Nucleic Acids Res	2013	73	L1 73/100
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis. PMID 23222129	Nucleic Acids Res	2012	69	L1 69/100
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines. ⚑ PMID 41263110	Nucleic Acids Res	2026	73	L1 73/100 ⚑
Rfam 15: RNA families database in 2025. PMID 39526405	Nucleic Acids Res	2025	68	L1 68/100
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter. PMID 38587191	Nucleic Acids Res	2024	68	L1 68/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism. PMID 37013995	Nucleic Acids Res	2023	72	L1 72/100
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers. PMID 36373634	Nucleic Acids Res	2022	68	L1 68/100
Phosphorylation of ribosomal protein S6 differentially affects mRNA translation based on ORF length. PMID 34871442	Nucleic Acids Res	2021	58	L1 58/100
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. PMID 34875090	Nucleic Acids Res	2022	56	L1 56/100
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes. PMID 34614189	Nucleic Acids Res	2021	64	64/100
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID 34197621	Nucleic Acids Res	2021	60	L1 60/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Bayesian prediction of RNA translation from ribosome profiling. ⚑ PMID 28126919	Nucleic Acids Res	2017	62	62/100 ⚑
Discovery and characterization of Alu repeat sequences via precise local read assembly. PMID 26503250	Nucleic Acids Res	2015	69	L1 69/100