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8 matching publication(s)
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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63/100
Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data.
PMID 41458999 · Front Bioinform · 2025
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64/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data.
PMID 37994351 · F1000Res · 2023
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67/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
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50/100
GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses.
PMID 33758032 · mSystems · 2021
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70/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
PMID 32374865 · Nucleic Acids Res · 2020
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61/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
PMID 32256520 · Front Genet · 2020
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50/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
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68/100