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195 matching publication(s)
Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD.
PMID 36762572 · Adv Sci (Weinh) · 2023
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Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
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Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque
PMID 36681937 · Brief Bioinform · 2023
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In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma.
PMID 36650150 · Nat Commun · 2023
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A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection.
PMID 36609152 · STAR Protoc · 2023
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Transcriptomic analysis unravels the molecular response of Lonicera japonica leaves to chilling stress.
PMID 36618608 · Front Plant Sci · 2022
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LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
PMID 36576131 · Gigascience · 2022
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Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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96/100
Specific signature biomarkers highlight the potential mechanisms of circulating neutrophils in aneurysmal subarachnoid hemorrhage.
PMID 36438795 · Front Pharmacol · 2022
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Genetic Variants in ARHGEF6 Cause Congenital Anomalies of the Kidneys and Urinary Tract in Humans, Mice, and Frogs.
PMID 36414417 · · 2023
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COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.
PMID 36350658 · Nucleic Acids Res · 2023
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Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota.
PMID 36242054 · Microbiome · 2022
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The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network.
PMID 36196618 · Development · 2022
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miR-4478 Accelerates Nucleus Pulposus Cells Apoptosis Induced by Oxidative Stress by Targeting MTH1.
PMID 36130054 · Spine (Phila Pa 1976) · 2022
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msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.
PMID 36123620 · BMC Bioinformatics · 2022
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CCL8 as a promising prognostic factor in diffuse large B-cell lymphoma via M2 macrophage interactions: A bioinformatic analysis of the tumor microenviron
PMID 36072582 · Front Immunol · 2022
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Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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A chromosome-level genome assembly provides insights into the environmental adaptability and outbreaks of Chlorops oryzae.
PMID 36028584 · Commun Biol · 2022
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Identification of Novel Therapeutic Candidates Against SARS-CoV-2 Infections: An Application of RNA Sequencing Toward mRNA Based Nanotherapeutics.
PMID 35983322 · Front Microbiol · 2022
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Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation.
PMID 35953471 · Nat Commun · 2022
83/100
Different Intestinal Microbiota with Growth Stages of Three-Breed Hybrid Pig.
PMID 35978648 · Biomed Res Int · 2022
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Analysis of the Taxonomy, Synteny, and Virulence Factors for Soft Rot Pathogen Pectobacterium aroidearum in Amorphophallus konjac<
PMID 35910650 · Front Microbiol · 2022
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Differential Gene Expression and Methylation Analysis of Melanoma in TCGA Database to Further Study the Expression Pattern of KYNU in Melanoma.
PMID 35893303 · J Pers Med · 2022
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Main Factors Influencing the Gut Microbiota of Datong Yaks in Mixed Group.
PMID 35883324 · Animals (Basel) · 2022
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Differential analysis of RNA structure probing experiments at nucleotide resolution: uncovering regulatory functions of RNA structure.
PMID 35869080 · Nat Commun · 2022
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T Cells With Activated STAT4 Drive the High-Risk Rejection State to Renal Allograft Failure After Kidney Transplantation.
PMID 35844542 · Front Immunol · 2022
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Base editing in human cells with monomeric DddA-TALE fusion deaminases.
PMID 35821233 · Nat Commun · 2022
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Identification and functional implications of pseudouridine RNA modification on small noncoding RNAs in the mammalian pathogen Trypanosoma brucei.
PMID 35714765 · J Biol Chem · 2022
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Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.
PMID 35605195 · Plant Commun · 2022
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Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints.
PMID 35624178 · Nat Commun · 2022
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Identification of the Wheat (Triticum aestivum) IQD Gene Family and an Expression Analysis of Candidate Genes Associated with Seed Dormancy and Germination
PMID 35456910 · Int J Mol Sci · 2022
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Enhanced Bioremediation Potential of Shewanella decolorationis RNA Polymerase Mutants and Evidence for Novel Azo Dye Biodegradation Pathways.
PMID 35391736 · Front Microbiol · 2022
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Integrated Analysis of Multiple Microarrays Based on Raw Data Identified Novel Gene Signatures in Recurrent Implantation Failure.
PMID 35197930 · Front Endocrinol (Lausanne) · 2022
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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SLDMS: A Tool for Calculating the Overlapping Regions of Sequences.
PMID 35046988 · Front Plant Sci · 2022
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The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation.
PMID 34938960 · FASEB Bioadv · 2021
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FEM: mining biological meaning from cell level in single-cell RNA sequencing data.
PMID 34909283 · PeerJ · 2021
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ScLRTC: imputation for single-cell RNA-seq data via low-rank tensor completion.
PMID 34844559 · BMC Genomics · 2021
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Lamin C is required to establish genome organization after mitosis.
PMID 34775987 · Genome Biol · 2021
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Pathway-targeting gene matrix for Drosophila gene set enrichment analysis.
PMID 34710184 · PLoS One · 2021
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Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.
PMID 34680427 · Biomedicines · 2021
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Pathway signatures derived from on-treatment tumor specimens predict response to anti-PD1 blockade in metastatic melanoma.
PMID 34654806 · Nat Commun · 2021
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Chromosome-Scale Assembly of the Complete Genome Sequence of Porcisia hertigi, Isolate C119, Strain LV43.
PMID 34647802 · Microbiol Resour Announc · 2021
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miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles.
PMID 34637468 · PLoS One · 2021
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Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning.
PMID 34575658 · J Pers Med · 2021
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Organelle Genomes and Transcriptomes of Nymphaea Reveal the Interplay between Intron Splicing and RNA Editing.
PMID 34576004 · Int J Mol Sci · 2021
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A near complete genome for goat genetic and genomic research.
PMID 34507524 · Genet Sel Evol · 2021
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Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania (Mundinia) orientalis, Isolate LSCM4, Strain LV768.
PMID 34498920 · Microbiol Resour Announc · 2021
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Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae.
PMID 34489462 · Sci Data · 2021
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