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643 matching publication(s)
Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.
PMID 25520726 · Front Plant Sci · 2014
93/100
Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection.
PMID 25057820 · PLoS Genet · 2014
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78/100
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
PMID 25391375 · Genome Res · 2014
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80/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
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76/100
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
PMID 25202605 · Appl Plant Sci · 2014
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87/100
OptiType: precision HLA typing from next-generation sequencing data.
PMID 25143287 · Bioinformatics · 2014
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95/100
High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.
PMID 25122613 · Genome Res · 2014
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87/100
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells.
PMID 24926665 · PLoS One · 2014
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87/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
PMID 24888378 · BMC Genomics · 2014
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77/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
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79/100
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data.
PMID 24747190 · Genomics Proteomics Bioinformatics · 2014
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90/100
Transcriptome analysis reveals differential splicing events in IPF lung tissue.
PMID 24647608 · PLoS One · 2014
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81/100
Quantitative epigenetic co-variation in CpG islands and co-regulation of developmental genes.
PMID 23999385 · Sci Rep · 2013
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95/100
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio
PMID 24236165 · PLoS One · 2013
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82/100
Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
PMID 24131564 · Genome Res · 2013
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100/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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76/100
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.
PMID 23979935 · G3 (Bethesda) · 2013
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91/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using R.
PMID 41640623 · Bioinformatics advances · 2026
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100/100
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.
PMID 22466171 · Genome Res · 2012
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80/100
Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · Microb Genom · 2019
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100/100
Differential Hsp90-dependent gene expression is strain-specific and common among yeast strains.
PMID 37138775 · iScience · 2023
100/100
Free circular introns with an unusual branchpoint in neuronal projections.
PMID 31697236 · Elife · 2019
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99/100
A platinum standard pan-genome resource that represents the population structure of Asian rice.
PMID 32265447 · Sci Data · 2020
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99/100
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm.
PMID 33295865 · Microb Genom · 2020
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98/100
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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97/100
Energy, power, and infrastructure demands from electrifying airport ground support equipment at United States airports.
PMID 41912553 · Nat Commun · 2026
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95/100
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
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90/100
Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments.
PMID 41657981 · Front Microbiol · 2026
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87/100
Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila.
PMID 32900993 · Nat Commun · 2020
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86/100
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
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85/100
Cancer-cell-secreted miR-204-5p induces leptin signalling pathway in white adipose tissue to promote cancer-associated cachexia.
PMID 37620316 · Nat Commun · 2023
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85/100
Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface.
PMID 39384533 · FEMS Microbiol Ecol · 2024
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85/100
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
PMID 33103064 · One Health Outlook · 2020
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85/100
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
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84/100
Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome.
PMID 33294007 · Evol Appl · 2020
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84/100
Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis.
PMID 32194870 · Theranostics · 2020
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79/100
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.
PMID 23284297 · PLoS Genet · 2012
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93/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · Nucleic Acids Res · 2011
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86/100
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).
PMID 22719821 · PLoS One · 2012
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78/100
KCNQ4, a novel potassium channel expressed in sensory outer hair cells, is mutated in dominant deafness.
PMID 10025409 · Cell · 1999
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88/100
Digital sorting of complex tissues for cell type-specific gene expression profiles.
PMID 23497278 · BMC Bioinformatics · 2013
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85/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
L1
84/100
The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements.
PMID 21857667 · Nat Cell Biol · 2011
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90/100
Hobbes: optimized gram-based methods for efficient read alignment.
PMID 22199254 · Nucleic Acids Res · 2011
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83/100
QTLs for heat-induced stomatal anatomy underpin gas exchange variation in field-grown wheat.
PMID 42231893 · Front Plant Sci · 2026
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100/100