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610 matching publication(s)
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing.
PMID 34103501 · Nat Commun · 2021
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Vaccine-induced ICOS+CD38+ circulating Tfh are sensitive biosensors of age-related changes in inflammatory pathway
PMID 34095875 · Cell Rep Med · 2021
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PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
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Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis.
PMID 34079055 · Commun Biol · 2021
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RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis.
PMID 34082707 · BMC Bioinformatics · 2021
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pyrpipe: a Python package for RNA-Seq workflows.
PMID 34085037 · NAR Genom Bioinform · 2021
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Duvernoy's Gland Transcriptomics of the Plains Black-Headed Snake, Tantilla nigriceps (Squamata, Colubridae): Unearthing the Venom of Small Rear-Fanged S
PMID 34066626 · Toxins (Basel) · 2021
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis.
PMID 34072576 · Genes (Basel) · 2021
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The relationship between PLOD1 expression level and glioma prognosis investigated using public databases.
PMID 34040895 · PeerJ · 2021
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High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies.
PMID 34010620 · Cell · 2021
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eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
PMID 34019643 · Nucleic Acids Res · 2021
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Genome-wide insights into population structure and host specificity of Campylobacter jejuni.
PMID 33990625 · Sci Rep · 2021
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Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus.
PMID 33999949 · PLoS Pathog · 2021
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Landscape of allele-specific transcription factor binding in the human genome.
PMID 33980847 · Nat Commun · 2021
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Determination of complete chromosomal haplotypes by bulk DNA sequencing.
PMID 33957932 · Genome Biol · 2021
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geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response.
PMID 33952321 · Genome Biol · 2021
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Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.
PMID 33937763 · NAR Genom Bioinform · 2021
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Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer.
PMID 33890574 · Elife · 2021
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Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq).
PMID 33793824 · Plant Cell · 2021
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Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.
PMID 33871355 · Elife · 2021
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Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra.
PMID 33779545 · Elife · 2021
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Identification of Proteins Deregulated by Platinum-Based Chemotherapy as Novel Biomarkers and Therapeutic Targets in Non-Small Cell Lung Cancer.
PMID 33777753 · Front Oncol · 2021
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Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.
PMID 33777521 · PeerJ · 2021
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Development of double-positive thymocytes at single-cell resolution.
PMID 33771202 · Genome Med · 2021
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The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.
PMID 33772001 · Nat Commun · 2021
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Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.
PMID 33729159 · Elife · 2021
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Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions.
PMID 33743211 · Cell · 2021
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Gene co-expression network analysis in human spinal cord highlights mechanisms underlying amyotrophic lateral sclerosis susceptibility.
PMID 33707641 · Sci Rep · 2021
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The SARS-CoV-2 subgenome landscape and its novel regulatory features.
PMID 33713597 · Mol Cell · 2021
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Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure.
PMID 33690630 · PLoS Genet · 2021
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TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
PMID 33705981 · Genomics Proteomics Bioinformatics · 2021
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Daily temperature cycles promote alternative splicing of RNAs encoding SR45a, a splicing regulator in maize.
PMID 33705553 · Plant Physiol · 2021
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CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA.
PMID 33667225 · PLoS Comput Biol · 2021
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Tumor methionine metabolism drives T-cell exhaustion in hepatocellular carcinoma.
PMID 33674593 · Nat Commun · 2021
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A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.
PMID 33649340 · Nat Commun · 2021
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In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs.
PMID 33636127 · Cell · 2021
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Experimental identification and in silico prediction of bacterivory in green algae.
PMID 33649548 · ISME J · 2021
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Potentially bioavailable iron produced through benthic cycling in glaciated Arctic fjords of Svalbard.
PMID 33649339 · Nat Commun · 2021
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Epigenome screening highlights that JMJD6 confers an epigenetic vulnerability and mediates sunitinib sensitivity in renal cell carcinoma.
PMID 33634984 · Clin Transl Med · 2021
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Curation of over 10 000 transcriptomic studies to enable data reuse.
PMID 33599246 · Database (Oxford) · 2021
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Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials.
PMID 33558569 · Sci Data · 2021
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IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner.
PMID 33522913 · BMC Bioinformatics · 2021
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Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits.
PMID 33461502 · Genet Sel Evol · 2021
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Current status of use of high throughput nucleotide sequencing in rheumatology.
PMID 33408124 · RMD Open · 2021
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Mutations in dnaA and a cryptic interaction site increase drug resistance in Mycobacterium tuberculosis.
PMID 33253310 · PLoS Pathog · 2020
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aCLImatise: automated generation of tool definitions for bioinformatics workflows.
PMID 33325479 · Bioinformatics · 2021
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Macrel: antimicrobial peptide screening in genomes and metagenomes.
PMID 33384902 · PeerJ · 2020
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