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High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.
PMID 25122613 · Genome Res · 2014
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Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · Microb Genom · 2019
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Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.
PMID 23284297 · PLoS Genet · 2012
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Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
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An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity.
PMID 42147490 · Cell Press Blue · 2026
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Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data.
PMID 41229397 · NAR Genom Bioinform · 2025
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Hepatocyte dedifferentiation in 2D culture reveals extensive transcriptomic and proteomic rewiring.
PMID 41111196 · Hepatol Commun · 2025
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Genomics Define Malignant Transformation in Myeloma Precursor Conditions.
PMID 41061199 · J Clin Oncol · 2025
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Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation.
PMID 41039608 · Genome Med · 2025
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randPedPCA: rapid approximation of principal components from large pedigrees.
PMID 40877802 · Genet Sel Evol · 2025
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Single-cell RNA-sequencing highlights a curtailed NK cell function in convalescent COVID-19 pregnant women.
PMID 40661959 · Front Immunol · 2025
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GRAMD1B is a regulator of lipid homeostasis, autophagic flux and phosphorylated tau.
PMID 40204713 · Nat Commun · 2025
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High performance imputation of structural and single nucleotide variants using low-coverage whole genome sequencing.
PMID 40155798 · Genet Sel Evol · 2025
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SIRE 2.0: a novel method for estimating polygenic host effects underlying infectious disease transmission, and analytical expressions for prediction accuracies.
PMID 40169992 · Genet Sel Evol · 2025
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Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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Variants in LRRC7 lead to intellectual disability, autism, aggression and abnormal eating behaviors
PMID 39256359 · · 2024
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PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin
PMID 38860884 · Microb Genom · 2024
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Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in DSRCTs.
PMID 38781959 · Cell Rep Med · 2024
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A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.
PMID 38638702 · NAR Genom Bioinform · 2024
98/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.
PMID 37563310 · Nat Immunol · 2023
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Generation of LexA enhancer-trap lines in Drosophila by an international scholastic network.
PMID 37279923 · G3 (Bethesda) · 2023
94/100
Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expres
PMID 37216666 · G3 (Bethesda) · 2023
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TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.
PMID 37200521 · Chem Res Toxicol · 2023
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Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · Microbiome · 2023
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Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
PMID 37012480 · Nat Methods · 2023
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nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing.
PMID 36961337 · Bioinformatics · 2023
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Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
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Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
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Genomic insight into the influence of selection, crossbreeding, and geography on population structure in poultry.
PMID 36670351 · Genet Sel Evol · 2023
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Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data.
PMID 36386613 · Front Microbiol · 2022
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Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival.
PMID 36329028 · Nat Commun · 2022
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RetroSnake: A modular pipeline to detect human endogenous retroviruses in genome sequencing data.
PMID 36339261 · iScience · 2022
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Lipopolysaccharide distinctively alters human microglia transcriptomes to resemble microglia from Alzheimer's disease mouse models.
PMID 36254682 · Dis Model Mech · 2022
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OSeMOSYS Global, an open-source, open data global electricity system model generator.
PMID 36241673 · Sci Data · 2022
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Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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Genomic regions and candidate genes selected during the breeding of rice in Vietnam.
PMID 35899250 · Evol Appl · 2022
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Sox8 remodels the cranial ectoderm to generate the ear.
PMID 35867760 · Proc Natl Acad Sci U S A · 2022
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Extensive transgressive gene expression in testis but not ovary in the homoploid hybrid Italian sparrow.
PMID 35726533 · Mol Ecol · 2022
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BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification.
PMID 35704392 · Plant J · 2022
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Long-Read RNA Sequencing Identifies Polyadenylation Elongation and Differential Transcript Usage of Host Transcripts During SARS-CoV-2 In Vitro Infection
PMID 35464437 · Front Immunol · 2022
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PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies.
PMID 35338232 · Commun Biol · 2022
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Mucospheres produced by a mixotrophic protist impact ocean carbon cycling.
PMID 35288549 · Nat Commun · 2022
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Identification of phenotype-specific networks from paired gene expression-cell shape imaging data.
PMID 35197309 · Genome Res · 2022
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Topological approximate Bayesian computation for parameter inference of an angiogenesis model.
PMID 35191485 · Bioinformatics · 2022
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An accurate method for identifying recent recombinants from unaligned sequences.
PMID 35025988 · Bioinformatics · 2022
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Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight.
PMID 35028613 · Cell Rep Med · 2021
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