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Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads.
PMID 38940130 · Bioinformatics · 2024
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Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus.
PMID 38909031 · Sci Data · 2024
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PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin
PMID 38860884 · Microb Genom · 2024
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Uncertainty in the mating strategy of honeybees causes bias and unreliability in the estimates of genetic parameters.
PMID 38632535 · Genet Sel Evol · 2024
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Discovery and validation of molecular patterns and immune characteristics in the peripheral blood of ischemic stroke patients.
PMID 38650649 · PeerJ · 2024
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Why an integrated view of gene expression studies on hematopoiesis in mouse aging is better than the sum of their parts.
PMID 38627103 · FEBS Lett · 2024
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Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs.
PMID 38594607 · Genet Sel Evol · 2024
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SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
PMID 38539106 · BMC Bioinformatics · 2024
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5-methylcytosine RNA modification regulators-based patterns and features of immune microenvironment in acute myeloid leukemia.
PMID 38277218 · Aging (Albany NY) · 2024
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Deciphering the Immune Microenvironment at the Forefront of Tumor Aggressiveness by Constructing a Regulatory Network with Single-Cell and Spatial Transcriptomi
PMID 38254989 · Genes (Basel) · 2024
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85/100
Cross-species comparative hippocampal transcriptomics in Alzheimer's disease.
PMID 38292167 · iScience · 2023
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75/100
The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary
PMID 38245722 · BMC Genomics · 2024
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Mutually exclusive teams-like patterns of gene regulation characterize phenotypic heterogeneity along the noradrenergic-mesenchymal axis in neuroblastoma.
PMID 38230570 · Cancer Biol Ther · 2024
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ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method.
PMID 38247911 · Bioengineering (Basel) · 2023
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75/100
Integrative analysis reveals chemokines CCL2 and CXCL5 mediated shear stress-induced aortic dissection formation.
PMID 38163105 · Heliyon · 2023
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75/100
Constructing an APOBEC-related gene signature with predictive value in the overall survival and therapeutic sensitivity in lung adenocarcinoma.
PMID 37954334 · Heliyon · 2023
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Stemness genes and miR-1247-3p expression associate with clinicopathological parameters and prognosis in lung adenocarcinoma.
PMID 37948380 · PLoS One · 2023
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Exploring microproteins from various model organisms using the mip-mining database.
PMID 37919660 · BMC Genomics · 2023
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Identification of immune-related signatures and pathogenesis differences between thoracic aortic aneurysm patients with bicuspid versus tricuspid valves via wei
PMID 37883426 · PLoS One · 2023
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Enterotoxins A and B produced by Staphylococcus aureus increase cell proliferation, invasion and cytarabine resistance in acute myeloid leukemia cell lin
PMID 37810000 · Heliyon · 2023
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Identification of a novel lncRNA prognostic signature and analysis of functional lncRNA AC115619.1 in hepatocellular carcinoma.
PMID 37614318 · Front Pharmacol · 2023
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spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.
PMID 37602419 · Nucleic Acids Res · 2023
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77/100
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles.
PMID 37444556 · Cancers (Basel) · 2023
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High DNA methylation age deceleration defines an aggressive phenotype with immunoexclusion environments in endometrial carcinoma.
PMID 37388735 · Front Immunol · 2023
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FAM3C/ILEI protein is elevated in psoriatic lesions and triggers psoriasiform hyperproliferation in mice.
PMID 37226685 · EMBO Mol Med · 2023
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iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr
PMID 37023414 · Cancer Immunol Res · 2023
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Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver
PMID 36864379 · Genet Sel Evol · 2023
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Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network.
PMID 36855106 · BMC Med Genomics · 2023
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Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque
PMID 36681937 · Brief Bioinform · 2023
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A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.
PMID 36694043 · Commun Biol · 2023
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Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy.
PMID 36596305 · Cell Host Microbe · 2023
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Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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89/100
Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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A chromosome-level genome assembly provides insights into the environmental adaptability and outbreaks of Chlorops oryzae.
PMID 36028584 · Commun Biol · 2022
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Differential Gene Expression and Methylation Analysis of Melanoma in TCGA Database to Further Study the Expression Pattern of KYNU in Melanoma.
PMID 35893303 · J Pers Med · 2022
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T Cells With Activated STAT4 Drive the High-Risk Rejection State to Renal Allograft Failure After Kidney Transplantation.
PMID 35844542 · Front Immunol · 2022
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Identification of the Wheat (Triticum aestivum) IQD Gene Family and an Expression Analysis of Candidate Genes Associated with Seed Dormancy and Germination
PMID 35456910 · Int J Mol Sci · 2022
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SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
PMID 35193506 · BMC Bioinformatics · 2022
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Assessing Bos taurus introgression in the UOA Bos indicus assembly.
PMID 34922445 · Genet Sel Evol · 2021
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86/100
Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform.
PMID 34927664 · Genet Mol Biol · 2021
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FEM: mining biological meaning from cell level in single-cell RNA sequencing data.
PMID 34909283 · PeerJ · 2021
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75/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx.
PMID 34254998 · Brief Bioinform · 2021
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79/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials.
PMID 33558569 · Sci Data · 2021
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Inference of Subpathway Activity Profiles Reveals Metabolism Abnormal Subpathway Regions in Glioblastoma Multiforme.
PMID 33072547 · Front Oncol · 2020
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Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex.
PMID 32176601 · Microb Genom · 2020
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Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel.
PMID 31913291 · Sci Data · 2020
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Draft Genome Sequences of Antimicrobial-Resistant Shigella Clinical Isolates from Pakistan.
PMID 31346012 · Microbiol Resour Announc · 2019
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