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118 matching publication(s)
A2TEA: Identifying trait-specific evolutionary adaptations.
PMID 37224329 · F1000Res · 2022
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A workflow reproducibility scale for automatic validation of biological interpretation results.
PMID 37150537 · Gigascience · 2022
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100/100
A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.
PMID 36748417 · Microb Genom · 2022
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QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
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Transcriptomic analysis unravels the molecular response of Lonicera japonica leaves to chilling stress.
PMID 36618608 · Front Plant Sci · 2022
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Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
PMID 36576131 · Gigascience · 2022
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Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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Disentangling the causal relationship between rabbit growth and cecal microbiota through structural equation models.
PMID 36536288 · Genet Sel Evol · 2022
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93/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
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Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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93/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
PMID 36472574 · Gigascience · 2022
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78/100
Specific signature biomarkers highlight the potential mechanisms of circulating neutrophils in aneurysmal subarachnoid hemorrhage.
PMID 36438795 · Front Pharmacol · 2022
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Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
What the Phage: a scalable workflow for the identification and analysis of phage sequences.
PMID 36399058 · Gigascience · 2022
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76/100
Inferring a spatial code of cell-cell interactions across a whole animal body.
PMID 36395331 · PLoS Comput Biol · 2022
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The seeker R package: simplified fetching and processing of transcriptome data.
PMID 36389425 · PeerJ · 2022
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MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data.
PMID 36386613 · Front Microbiol · 2022
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Wochenende - modular and flexible alignment-based shotgun metagenome analysis.
PMID 36368923 · BMC Genomics · 2022
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88/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis.
PMID 36352408 · BMC Biol · 2022
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84/100
Shared and unique phosphoproteomics responses in skeletal muscle from exercise models and in hyperammonemic myotubes.
PMID 36345342 · iScience · 2022
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Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival.
PMID 36329028 · Nat Commun · 2022
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87/100
RetroSnake: A modular pipeline to detect human endogenous retroviruses in genome sequencing data.
PMID 36339261 · iScience · 2022
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79/100
Comparative Genomics of Listeria monocytogenes Isolates from Ruminant Listeriosis Cases in the Midwest United States.
PMID 36314928 · Microbiol Spectr · 2022
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91/100
CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.
PMID 36304334 · Front Bioinform · 2022
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Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
PMID 36253367 · Nat Commun · 2022
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Lipopolysaccharide distinctively alters human microglia transcriptomes to resemble microglia from Alzheimer's disease mouse models.
PMID 36254682 · Dis Model Mech · 2022
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Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota.
PMID 36242054 · Microbiome · 2022
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Analysis of Tumor-Infiltrating T-Cell Transcriptomes Reveal a Unique Genetic Signature across Different Types of Cancer.
PMID 36232369 · Int J Mol Sci · 2022
87/100
Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective populatio⚑
PMID 36226801 · G3 (Bethesda) · 2022
84/100
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OSeMOSYS Global, an open-source, open data global electricity system model generator.
PMID 36241673 · Sci Data · 2022
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The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network.
PMID 36196618 · Development · 2022
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miR-4478 Accelerates Nucleus Pulposus Cells Apoptosis Induced by Oxidative Stress by Targeting MTH1.
PMID 36130054 · Spine (Phila Pa 1976) · 2022
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AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas.
PMID 36134663 · JCI Insight · 2022
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Whole-Genome Sequence of Cervid atadenovirus A from the Initial Cases of an Adenovirus Hemorrhagic Disease Epizootic of Black-Tailed Deer in Canada.
PMID 36129291 · Microbiol Resour Announc · 2022
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81/100
msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.
PMID 36123620 · BMC Bioinformatics · 2022
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Genome Sequencing of Methicillin-Resistant and Methicillin-Susceptible Mammaliicoccus sciuri from Diseased Animals.
PMID 36125295 · Microbiol Resour Announc · 2022
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92/100
sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.
PMID 36107768 · Nucleic Acids Res · 2022
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Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
PMID 36064968 · Nat Cell Biol · 2022
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Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.
PMID 36088548 · Brief Bioinform · 2022
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CCL8 as a promising prognostic factor in diffuse large B-cell lymphoma via M2 macrophage interactions: A bioinformatic analysis of the tumor microenviron
PMID 36072582 · Front Immunol · 2022
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Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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Comparative genomics of dairy-associated Staphylococcus aureus from selected sub-Saharan African regions reveals milk as reservoir for human-and animal-d
PMID 36046020 · Front Microbiol · 2022
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A chromosome-level genome assembly provides insights into the environmental adaptability and outbreaks of Chlorops oryzae.
PMID 36028584 · Commun Biol · 2022
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Spatial patterns of benthic biofilm diversity among streams draining proglacial floodplains.
PMID 36003939 · Front Microbiol · 2022
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Identification of Novel Therapeutic Candidates Against SARS-CoV-2 Infections: An Application of RNA Sequencing Toward mRNA Based Nanotherapeutics.
PMID 35983322 · Front Microbiol · 2022
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Systems spatiotemporal dynamics of traumatic brain injury at single-cell resolution reveals humanin as a therapeutic target.
PMID 35951114 · Cell Mol Life Sci · 2022
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Towards reliable whole genome sequencing for outbreak preparedness and response.
PMID 35945497 · BMC Genomics · 2022
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Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation.
PMID 35953471 · Nat Commun · 2022
83/100