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37 matching publication(s)

Publication	Journal	Year	Score	Verdict
TOSCA: an automated Tumor Only Somatic CAlling workflow for somatic mutation detection without matched normal samples. PMID 36699358	Bioinform Adv	2022	50	L1 50/100
Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism. PMID 36660474	iScience	2022	71	L1 71/100
Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice. PMID 36553546	Genes (Basel)	2022	67	L1 67/100
Oxidative stress protection and growth promotion activity of Pseudomonas mercuritolerans sp. nov., in forage plants under mercury abiotic stress conditio ⚑ PMID 36560952	Front Microbiol	2022	54	L1 54/100 ⚑
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
hgtseq: A Standard Pipeline to Study Horizontal Gene Transfer. PMID 36498841	Int J Mol Sci	2022	63	L1 63/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. PMID 36451166	Genome Biol	2022	50	L1 50/100
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y ⚑ PMID 36422864	Elife	2022	55	L1 55/100 ⚑
Genetic architecture of natural variation of cardiac performance from flies to humans. PMID 36383075	Elife	2022	74	L1 74/100
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata. PMID 36333777	Microbiome	2022	64	L1 64/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. PMID 36262335	F1000Res	2022	59	L1 59/100
Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes. ⚑ PMID 36192523	Commun Biol	2022	68	L1 68/100 ⚑
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties. PMID 36159175	NAR Genom Bioinform	2022	66	L1 66/100
A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation. PMID 36149401	Elife	2022	50	L1 50/100
auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication. PMID 36078102	Cells	2022	50	L1 50/100
Comparative Metagenomic Analysis of Biosynthetic Diversity across Sponge Microbiomes Highlights Metabolic Novelty, Conservation, and Diversification. PMID 35862823	mSystems	2022	56	L1 56/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo. PMID 35784648	Cell Rep Methods	2022	66	L1 66/100
Apoptotic brown adipocytes enhance energy expenditure via extracellular inosine PMID 35790189	—	2022	57	L1 57/100
High-throughput sequencing SELEX for the determination of DNA-binding protein specificities in vitro. PMID 35776646	STAR Protoc	2022	65	65/100
A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures. PMID 35733249	Proc Natl Acad Sci U S A	2022	69	L1 69/100
Genetic polyploid phasing from low-depth progeny samples. PMID 35692633	iScience	2022	73	73/100
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas. PMID 35701420	Sci Data	2022	50	L1 50/100
GeMI: interactive interface for transformer-based Genomic Metadata Integration. PMID 35657113	Database (Oxford)	2022	64	L1 64/100
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. ⚑ PMID 35584008	Microb Genom	2022	61	L1 61/100 ⚑
Multi-scale integrative analyses identify THBS2+ cancer-associated fibroblasts as a key orchestrator promoting aggressiveness in early-stage lung ade PMID 35547750	Theranostics	2022	68	L1 68/100
Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF. PMID 35508485	Nat Commun	2022	55	L1 55/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. PMID 35494238	iScience	2022	60	L1 60/100
Blood Transcriptome Analysis of Septic Patients Reveals a Long Non-Coding Alu-RNA in the Complement C5a Receptor 1 Gene. PMID 35447887	Noncoding RNA	2022	64	L1 64/100
The HCV Envelope Glycoprotein Down-Modulates NF-κB Signalling and Associates With Stimulation of the Host Endoplasmic Reticulum Stress Pathway. PMID 35371105	Front Immunol	2022	50	L1 50/100
Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome. PMID 35338551	Plant Biotechnol J	2022	71	71/100
Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. PMID 35301123	Metab Eng	2022	71	L1 71/100
Genome-Wide Survey and Development of the First Microsatellite Markers Database (AnCorDB) in Anemone coronaria L. ⚑ PMID 35328546	Int J Mol Sci	2022	55	L1 55/100 ⚑
TC-hunter: identification of the insertion site of a transgenic gene within the host genome. PMID 35184734	BMC Genomics	2022	69	L1 69/100
epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing. ⚑ PMID 35178872	Mol Ecol Resour	2022	52	52/100 ⚑
Downstream high-speed plasma jet generation as a direct consequence of shock reformation. PMID 35105885	Nat Commun	2022	67	L1 67/100
SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes. PMID 36875992	F1000Res	2022	67	L1 67/100