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194 matching publication(s)
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
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CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons.
PMID 36262316 · iScience · 2022
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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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Effects of replication domains on genome-wide UV-induced DNA damage and repair.
PMID 36155646 · PLoS Genet · 2022
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Estimating biodiversity across the tree of life on Mount Everest's southern flank with environmental DNA.
PMID 36148432 · iScience · 2022
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A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation.
PMID 36149401 · Elife · 2022
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Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution.⚑
PMID 35977485 · Cell Rep · 2022
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Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup.
PMID 35931118 · J Biol Chem · 2022
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Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.⚑
PMID 35902092 · Gigascience · 2022
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Gene module regulation in dilated cardiomyopathy and the role of Na/K-ATPase.⚑
PMID 35901050 · PLoS One · 2022
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Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition.⚑
PMID 35819852 · J Clin Invest · 2022
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Apoptotic brown adipocytes enhance energy expenditure via extracellular inosine
PMID 35790189 · · 2022
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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.⚑
PMID 35584008 · Microb Genom · 2022
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61/100
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Multi-scale integrative analyses identify THBS2+ cancer-associated fibroblasts as a key orchestrator promoting aggressiveness in early-stage lung ade
PMID 35547750 · Theranostics · 2022
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GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.
PMID 35501696 · BMC Bioinformatics · 2022
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Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species (Corbicula fluminea).
PMID 35444631 · Front Microbiol · 2022
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Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins.
PMID 35301123 · Metab Eng · 2022
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Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading.
PMID 35260568 · Nat Commun · 2022
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Identification of new ETV6 modulators through a high-throughput functional screening.
PMID 35198911 · iScience · 2022
68/100
Profiling Selective Packaging of Host RNA and Viral RNA Modification in SARS-CoV-2 Viral Preparations.
PMID 35186917 · Front Cell Dev Biol · 2022
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TC-hunter: identification of the insertion site of a transgenic gene within the host genome.
PMID 35184734 · BMC Genomics · 2022
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Temporal trends in methane emissions from a small eutrophic reservoir: the key role of a spring burst.
PMID 35126532 · Biogeosciences · 2021
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Downstream high-speed plasma jet generation as a direct consequence of shock reformation.
PMID 35105885 · Nat Commun · 2022
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GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring.
PMID 35087491 · Front Microbiol · 2022
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Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection.⚑
PMID 35072628 · Elife · 2022
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Comparative Genomics of Borderline Oxacillin-Resistant Staphylococcus aureus Detected during a Pseudo-outbreak of Methicillin-Resistant S. aureus in a Neonatal
PMID 35038924 · mBio · 2022
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Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients.
PMID 35012625 · Genome Biol · 2022
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Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
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Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq.
PMID 34875090 · Nucleic Acids Res · 2022
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Target identification for repurposed drugs active against SARS-CoV-2 via high-throughput inverse docking.
PMID 34825285 · J Comput Aided Mol Des · 2021
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Loss of mutual protection between human osteoclasts and chondrocytes in damaged joints initiates osteoclast-mediated cartilage degradation by MMPs.
PMID 34811438 · Sci Rep · 2021
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Phase transition specified by a binary code patterns the vertebrate eye cup.
PMID 34757798 · Sci Adv · 2021
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Design considerations for workflow management systems use in production genomics research and the clinic.
PMID 34737383 · Sci Rep · 2021
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Bioavailable Nutrients (N and P) and Precipitation Patterns Drive Cyanobacterial Blooms in Missisquoi Bay, Lake Champlain.
PMID 34683418 · Microorganisms · 2021
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Reverse Engineering of the Pediatric Sepsis Regulatory Network and Identification of Master Regulators.
PMID 34680414 · Biomedicines · 2021
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Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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Monocarboxylate Transporter-2 Expression Restricts Tumor Growth in a Murine Model of Lung Cancer: A Multi-Omic Analysis.⚑
PMID 34638954 · Int J Mol Sci · 2021
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Effect of elevation, season and accelerated snowmelt on biogeochemical processes during isolated conifer needle litter decomposition.
PMID 34434657 · PeerJ · 2021
50/100
Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients.
PMID 34421903 · Front Immunol · 2021
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A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
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Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis.⚑
PMID 34335581 · Front Immunol · 2021
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Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection.⚑
PMID 34145026 · Life Sci Alliance · 2021
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Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens.
PMID 33967968 · Front Microbiol · 2021
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From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles.
PMID 33960035 · Mol Ecol · 2021
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SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.
PMID 33932985 · BMC Bioinformatics · 2021
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Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity.
PMID 33837217 · Nat Commun · 2021
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Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod.⚑
PMID 33782539 · Commun Biol · 2021
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GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses.
PMID 33758032 · mSystems · 2021
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Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data.
PMID 33746712 · Front Mol Neurosci · 2021
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