Publications 194 Datasets 392.5k Experiments 5.2k

Explore

194 matching publication(s)

Publication	Journal	Year	Score	Verdict
Circulating mucosal-associated invariant T cells identify patients responding to anti-PD-1 therapy. PMID 33723257	Nat Commun	2021	70	L1 70/100
Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression. PMID 33722289	Genome Biol	2021	66	L1 66/100
Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. PMID 33514540	Sci Adv	2021	63	L1 63/100
Interaction between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion Negative Rhabdomyosarcoma. PMID 33420019	Nat Commun	2021	50	50/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma. PMID 33086062	Cell Rep	2020	59	L1 59/100
Metabolic profiling during malaria reveals the role of the aryl hydrocarbon receptor in regulating kidney injury. PMID 33021470	Elife	2020	62	L1 62/100
Expression Patterns of Immune Genes Reveal Heterogeneous Subtypes of High-Risk Neuroblastoma. PMID 32629858	Cancers (Basel)	2020	73	L1 73/100
A crowdsourced set of curated structural variants for the human genome. PMID 32559231	PLoS Comput Biol	2020	71	L1 71/100
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. ⚑ PMID 32596448	Sci Adv	2020	57	L1 57/100 ⚑
In vivo microscopy reveals macrophage polarization locally promotes coherent microtubule dynamics in migrating cancer cells. PMID 32665556	Nat Commun	2020	50	L1 50/100
Fluent genomics with plyranges and tximeta. PMID 32528659	F1000Res	2020	69	L1 69/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments. ⚑ PMID 32093613	BMC Genomics	2020	62	L1 62/100 ⚑
A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated ⚑ PMID 32019526	BMC Plant Biol	2020	62	L1 62/100 ⚑
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment. PMID 31978147	PLoS One	2020	71	L1 71/100
PulmonDB: a curated lung disease gene expression database. ⚑ PMID 31949184	Sci Rep	2020	53	L1 53/100 ⚑
Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma. ⚑ PMID 31784732	Nat Genet	2019	58	58/100 ⚑
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID 31164912	Plant Methods	2019	59	L1 59/100
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data. PMID 31110304	Sci Rep	2019	73	L1 73/100
Integrating herbarium specimen observations into global phenology data systems. PMID 30937223	Appl Plant Sci	2019	60	L1 60/100
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation. PMID 30561326	Elife	2018	50	L1 50/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing. PMID 30208848	BMC Genomics	2018	50	50/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
Wide-Open: Accelerating public data release by automating detection of overdue datasets. PMID 28594819	PLoS Biol	2017	74	L1 74/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100
HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads. ⚑ PMID 26945881	BMC Genomics	2016	58	58/100 ⚑
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑
Discovery and characterization of Alu repeat sequences via precise local read assembly. PMID 26503250	Nucleic Acids Res	2015	69	L1 69/100
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance. PMID 25943316	BMC Genomics	2015	73	73/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100
Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. PMID 18834967	—	2008	70	L1 70/100
A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and bl PMID 35471187	Elife	2022	73	L1 73/100
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. PMID 36321867	Bioinformatics	2023	67	L1 67/100
Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing. PMID 34244540	Sci Rep	2021	50	L1 50/100