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40 matching publication(s)

Publication	Journal	Year	Score	Verdict
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis. PMID 35870428	EBioMedicine	2022	85	L1 85/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease. PMID 36518809	Comput Intell Neurosci	2022	74	L1 74/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection. PMID 36450262	Cell Rep	2022	50	L1 50/100
Comprehensive Transcriptome Analysis Reveals Genome-Wide Changes Associated with Endoplasmic Reticulum (ER) Stress in Potato (Solanum tuberosum L.). PMID 36430273	Int J Mol Sci	2022	62	L1 62/100
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y ⚑ PMID 36422864	Elife	2022	55	L1 55/100 ⚑
CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids. PMID 36396635	Nat Commun	2022	50	L1 50/100
Genetic architecture of natural variation of cardiac performance from flies to humans. PMID 36383075	Elife	2022	74	L1 74/100
Single-cell transcriptomics identifies Keap1-Nrf2 regulated collective invasion in a Drosophila tumor model. PMID 36321803	Elife	2022	72	L1 72/100
Stromal androgen signaling acts as tumor niches to drive prostatic basal epithelial progenitor-initiated oncogenesis. ⚑ PMID 36323713	Nat Commun	2022	63	L1 63/100 ⚑
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data. ⚑ PMID 36321549	Mol Syst Biol	2022	53	L1 53/100 ⚑
CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons. PMID 36262316	iScience	2022	62	L1 62/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. PMID 36262335	F1000Res	2022	59	L1 59/100
Effects of replication domains on genome-wide UV-induced DNA damage and repair. PMID 36155646	PLoS Genet	2022	74	74/100
Estimating biodiversity across the tree of life on Mount Everest's southern flank with environmental DNA. PMID 36148432	iScience	2022	65	L1 65/100
A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation. PMID 36149401	Elife	2022	50	L1 50/100
Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution. ⚑ PMID 35977485	Cell Rep	2022	63	L1 63/100 ⚑
Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup. PMID 35931118	J Biol Chem	2022	73	L1 73/100
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake. ⚑ PMID 35902092	Gigascience	2022	61	L1 61/100 ⚑
Gene module regulation in dilated cardiomyopathy and the role of Na/K-ATPase. ⚑ PMID 35901050	PLoS One	2022	55	L1 55/100 ⚑
Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition. ⚑ PMID 35819852	J Clin Invest	2022	68	L1 68/100 ⚑
Apoptotic brown adipocytes enhance energy expenditure via extracellular inosine PMID 35790189	—	2022	57	L1 57/100
A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures. PMID 35733249	Proc Natl Acad Sci U S A	2022	69	L1 69/100
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. ⚑ PMID 35584008	Microb Genom	2022	61	L1 61/100 ⚑
Multi-scale integrative analyses identify THBS2+ cancer-associated fibroblasts as a key orchestrator promoting aggressiveness in early-stage lung ade PMID 35547750	Theranostics	2022	68	L1 68/100
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. PMID 35501696	BMC Bioinformatics	2022	67	L1 67/100
Environment and Co-occurring Native Mussel Species, but Not Host Genetics, Impact the Microbiome of a Freshwater Invasive Species (Corbicula fluminea). PMID 35444631	Front Microbiol	2022	55	L1 55/100
Horizontal transmission enables flexible associations with locally adapted symbiont strains in deep-sea hydrothermal vent symbioses. PMID 35349333	Proc Natl Acad Sci U S A	2022	66	L1 66/100
Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. PMID 35301123	Metab Eng	2022	71	L1 71/100
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading. PMID 35260568	Nat Commun	2022	55	L1 55/100
Profiling Selective Packaging of Host RNA and Viral RNA Modification in SARS-CoV-2 Viral Preparations. PMID 35186917	Front Cell Dev Biol	2022	56	L1 56/100
TC-hunter: identification of the insertion site of a transgenic gene within the host genome. PMID 35184734	BMC Genomics	2022	69	L1 69/100
Downstream high-speed plasma jet generation as a direct consequence of shock reformation. PMID 35105885	Nat Commun	2022	67	L1 67/100
GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring. PMID 35087491	Front Microbiol	2022	50	L1 50/100
Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection. ⚑ PMID 35072628	Elife	2022	57	L1 57/100 ⚑
Comparative Genomics of Borderline Oxacillin-Resistant Staphylococcus aureus Detected during a Pseudo-outbreak of Methicillin-Resistant S. aureus in a Neonatal PMID 35038924	mBio	2022	63	L1 63/100
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. PMID 35012625	Genome Biol	2022	68	L1 68/100
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. PMID 34875090	Nucleic Acids Res	2022	56	L1 56/100
A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and bl PMID 35471187	Elife	2022	73	L1 73/100