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33 matching publication(s)

Publication	Journal	Year	Score	Verdict
Microbial diversity of plant pathogens and insect endosymbionts in Reptalus artemisiae. PMID 41826827	BMC Microbiol	2026	71	L1 71/100
Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk. PMID 41796334	Genome Biol	2026	68	L1 68/100
Investigating epigenetic biomarkers of age, sex, and disease in captive South African cheetahs (Acinonyx jubatus jubatus). PMID 41528985	PLoS One	2026	58	L1 58/100
Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni). PMID 41490125	PLoS One	2026	69	L1 69/100
Cell type-specific eQTL analysis of COVID-19 based on single-cell transcriptomic data. ⚑ PMID 41064594	NAR Genom Bioinform	2025	51	L1 51/100 ⚑
Caecilians maintain a functional long-wavelength-sensitive cone opsin gene despite signatures of relaxed selection and more than 200 million years of fossoriali ⚑ PMID 40990923	Evolution	2025	64	L1 64/100 ⚑
H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity. ⚑ PMID 40764058	Genome Res	2025	55	L1 55/100 ⚑
Estimation of genetic parameters and genome-wide association study for carcass traits in native chickens. ⚑ PMID 40211845	Anim Biosci	2025	71	L1 71/100 ⚑
Data-driven projections of candidate enhancer-activating SNPs in immune regulation. PMID 40011812	BMC Genomics	2025	57	L1 57/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation. PMID 39549198	Geroscience	2024	54	L1 54/100
Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. ⚑ PMID 39009986	Genet Sel Evol	2024	69	L1 69/100 ⚑
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter. PMID 38587191	Nucleic Acids Res	2024	68	L1 68/100
Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions. ⚑ PMID 38443825	BMC Bioinformatics	2024	62	L1 62/100 ⚑
Identification of herpesvirus transcripts from genomic regions around the replication origins. PMID 37773348	Sci Rep	2023	59	L1 59/100
Utilizing the codon adaptation index to evaluate the susceptibility to HIV-1 and SARS-CoV-2 related coronaviruses in possible target cells in humans. PMID 36760235	Front Cell Infect Microbiol	2023	71	L1 71/100
Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing. PMID 36401180	Genet Sel Evol	2022	50	L1 50/100
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers. PMID 36373634	Nucleic Acids Res	2022	68	L1 68/100
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data. ⚑ PMID 36321549	Mol Syst Biol	2022	53	L1 53/100 ⚑
Systematic analysis of CNGCs in cotton and the positive role of GhCNGC32 and GhCNGC35 in salt tolerance. PMID 35931984	BMC Genomics	2022	—	not yet assessed
Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression. PMID 33722289	Genome Biol	2021	66	L1 66/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
Sister DNA Entrapment between Juxtaposed Smc Heads and Kleisin of the Cohesin Complex. PMID 31201089	Mol Cell	2019	64	L1 64/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples. ⚑ PMID 29221171	Oncotarget	2017	73	73/100 ⚑
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑
Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella). ⚑ PMID 26248502	Sci Rep	2015	70	L1 70/100 ⚑