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129 matching publication(s)

Publication	Journal	Year	Score	Verdict
Fluent genomics with plyranges and tximeta. PMID 32528659	F1000Res	2020	69	L1 69/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer. PMID 32323921	Mol Syst Biol	2020	66	L1 66/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments. ⚑ PMID 32093613	BMC Genomics	2020	62	L1 62/100 ⚑
A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated ⚑ PMID 32019526	BMC Plant Biol	2020	62	L1 62/100 ⚑
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
Comparative profiling of skeletal muscle models reveals heterogeneity of transcriptome and metabolism. PMID 31825657	Am J Physiol Cell Physiol	2019	64	L1 64/100
Transcriptomic Adjustments of Staphylococcus aureus COL (MRSA) Forming Biofilms Under Acidic and Alkaline Conditions. ⚑ PMID 31681245	Front Microbiol	2019	73	L1 73/100 ⚑
Core transcriptional signatures of phase change in the migratory locust. ⚑ PMID 31292921	Protein Cell	2019	60	L1 60/100 ⚑
Sister DNA Entrapment between Juxtaposed Smc Heads and Kleisin of the Cohesin Complex. PMID 31201089	Mol Cell	2019	64	L1 64/100
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID 31164912	Plant Methods	2019	59	L1 59/100
Transcriptome maps of general eukaryotic RNA degradation factors. PMID 31135339	Elife	2019	60	L1 60/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
Integrating herbarium specimen observations into global phenology data systems. PMID 30937223	Appl Plant Sci	2019	60	L1 60/100
The effect of 16S rRNA region choice on bacterial community metabarcoding results. PMID 30720800	Sci Data	2019	59	L1 59/100
Complete Genome Sequencing of Lactobacillus plantarum ZLP001, a Potential Probiotic That Enhances Intestinal Epithelial Barrier Function and Defense Agai PMID 30542296	Front Physiol	2018	68	L1 68/100
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation. PMID 30561326	Elife	2018	50	L1 50/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples. ⚑ PMID 29221171	Oncotarget	2017	73	73/100 ⚑
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
Newborn sex-specific transcriptome signatures and gestational exposure to fine particles: findings from the ENVIRONAGE birth cohort. PMID 28583124	Environ Health	2017	71	L1 71/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑
Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella). ⚑ PMID 26248502	Sci Rep	2015	70	L1 70/100 ⚑