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55 matching publication(s)
A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum.⚑
PMID 25392735 · Gigascience · 2014
61/100
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RNA-sequence analysis of primary alveolar macrophages after in vitro infection with porcine reproductive and respiratory syndrome virus strains of differing vir⚑
PMID 24643046 · PLoS One · 2014
41/100
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Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.⚑
PMID 23536903 · PLoS One · 2013
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45/100
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StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.⚑
PMID 24627795 · F1000Res · 2013
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43/100
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MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
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80/100
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Integrated analysis of post-transcriptional regulations reveals insights into acute myeloid leukemia.⚑
PMID 41407883 · Commun Biol · 2025
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32/100
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ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
PMID 41263110 · Nucleic Acids Res · 2026
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73/100
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Gli1-expressing stromal cells are highly reparative precursors of long-lived chondroprogenitors in the fetal murine limb.⚑
PMID 41253754 · Nat Commun · 2025
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10/100
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MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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70/100
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Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.⚑
PMID 39009986 · Genet Sel Evol · 2024
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69/100
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On the holobiont 'predictome' of immunocompetence in pigs.⚑
PMID 37127575 · Genet Sel Evol · 2023
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40/100
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Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton.⚑
PMID 37098087 · PLoS One · 2023
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38/100
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Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
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74/100
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Gene Regulatory Interactions at Lamina-Associated Domains.⚑
PMID 36833261 · Genes (Basel) · 2023
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31/100
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Social complexity, life-history and lineage influence the molecular basis of castes in vespid wasps.⚑
PMID 36828829 · Nat Commun · 2023
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52/100
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Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis.⚑
PMID 36725967 · Sci Rep · 2023
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74/100
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Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning.⚑
PMID 36611079 · NPJ Precis Oncol · 2023
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No data access
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β-Catenin activity induces an RNA biosynthesis program promoting therapy resistance in T-cell acute lymphoblastic leukemia.⚑
PMID 36597789 · EMBO Mol Med · 2023
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65/100
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Oxidative stress protection and growth promotion activity of Pseudomonas mercuritolerans sp. nov., in forage plants under mercury abiotic stress conditio⚑
PMID 36560952 · Front Microbiol · 2022
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54/100
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Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures.⚑
PMID 36527260 · Glia · 2022
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26/100
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N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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55/100
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RNA Editing Alterations Define Disease Manifestations in the Progression of Experimental Autoimmune Encephalomyelitis (EAE).⚑
PMID 36429012 · Cells · 2022
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37/100
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes.⚑
PMID 36192523 · Commun Biol · 2022
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68/100
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KAGE: fast alignment-free graph-based genotyping of SNPs and short indels.⚑
PMID 36195962 · Genome Biol · 2022
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42/100
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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.⚑
PMID 35584008 · Microb Genom · 2022
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61/100
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Genome-Wide Survey and Development of the First Microsatellite Markers Database (AnCorDB) in Anemone coronaria L.⚑
PMID 35328546 · Int J Mol Sci · 2022
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55/100
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Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function.⚑
PMID 35320603 · Glob Chang Biol · 2022
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39/100
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Metagenetic and Volatilomic Approaches to Elucidate the Effect of Lactiplantibacillus plantarum Starter Cultures on Sicilian Table Olives.⚑
PMID 35281313 · Front Microbiol · 2022
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23/100
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epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing.⚑
PMID 35178872 · Mol Ecol Resour · 2022
52/100
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Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a⚑
PMID 35143511 · PLoS One · 2022
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48/100
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snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data.⚑
PMID 34900230 · F1000Res · 2021
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67/100
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EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.⚑
PMID 34805989 · NAR Genom Bioinform · 2021
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54/100
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Phased differentiation of γδ T and T CD8 tumor-infiltrating lymphocytes revealed by single-cell transcriptomics of human cancers.⚑
PMID 34721945 · Oncoimmunology · 2021
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44/100
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Antigen and checkpoint receptor engagement recalibrates T cell receptor signal strength.⚑
PMID 34534438 · Immunity · 2021
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37/100
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Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania (Mundinia) enriettii, Isolate CUR178, Strain LV763.⚑
PMID 34498918 · Microbiol Resour Announc · 2021
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80/100
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Blood RNA signature RISK4LEP predicts leprosy years before clinical onset.⚑
PMID 34090257 · EBioMedicine · 2021
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53/100
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Microbial sulfate reduction by Desulfovibrio is an important source of hydrogen sulfide from a large swine finishing facility.⚑
PMID 34021225 · Sci Rep · 2021
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70/100
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Accelerated Evolution of Tissue-Specific Genes Mediates Divergence Amidst Gene Flow in European Green Lizards.⚑
PMID 33988711 · Genome Biol Evol · 2021
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23/100
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A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations.⚑
PMID 33892623 · Genet Sel Evol · 2021
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63/100
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Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod.⚑
PMID 33782539 · Commun Biol · 2021
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57/100
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Plant Soft Rot Development and Regulation from the Viewpoint of Transcriptomic Profiling.⚑
PMID 32927917 · Plants (Basel) · 2020
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No data access
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A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.⚑
PMID 32718933 · G3 (Bethesda) · 2020
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89/100
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Molecular and Clinical Relevance of ZBTB38 Expression Levels in Prostate Cancer.⚑
PMID 32365491 · Cancers (Basel) · 2020
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35/100
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PulmonDB: a curated lung disease gene expression database.⚑
PMID 31949184 · Sci Rep · 2020
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53/100
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Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma.⚑
PMID 31784732 · Nat Genet · 2019
58/100
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Transcriptomic Adjustments of Staphylococcus aureus COL (MRSA) Forming Biofilms Under Acidic and Alkaline Conditions.⚑
PMID 31681245 · Front Microbiol · 2019
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73/100
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Accurate sequence variant genotyping in cattle using variation-aware genome graphs.⚑
PMID 31092189 · Genet Sel Evol · 2019
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45/100
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First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_.⚑
PMID 30691411 · BMC Bioinformatics · 2019
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30/100
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Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes.⚑
PMID 30503143 · Cell Stem Cell · 2018
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30/100
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