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541 matching publication(s)
A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum.⚑
PMID 25392735 · Gigascience · 2014
61/100
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Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection.
PMID 25057820 · PLoS Genet · 2014
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78/100
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
PMID 25391375 · Genome Res · 2014
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80/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
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76/100
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
PMID 25202605 · Appl Plant Sci · 2014
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87/100
Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function.
PMID 24885615 · BMC Genomics · 2014
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50/100
Comprehensive transcriptome study to develop molecular resources of the copepod Calanus sinicus for their potential ecological applications.⚑
PMID 24982883 · Biomed Res Int · 2014
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61/100
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Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain.
PMID 24992200 · PLoS Pathog · 2014
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63/100
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells.
PMID 24926665 · PLoS One · 2014
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87/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
PMID 24888378 · BMC Genomics · 2014
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77/100
Minimal metabolic pathway structure is consistent with associated biomolecular interactions.
PMID 24987116 · Mol Syst Biol · 2014
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30/100
TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
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61/100
Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
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59/100
Metatranscriptomics of the human oral microbiome during health and disease.
PMID 24692635 · mBio · 2014
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62/100
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.).
PMID 24598808 · PLoS One · 2014
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58/100
Polyploidy and the petal transcriptome of Gossypium.
PMID 24393201 · BMC Plant Biol · 2014
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51/100
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data.
PMID 24747190 · Genomics Proteomics Bioinformatics · 2014
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90/100
Transcriptome analysis reveals differential splicing events in IPF lung tissue.
PMID 24647608 · PLoS One · 2014
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81/100
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.⚑
PMID 25506420 · F1000Res · 2013
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42/100
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Vespucci: a system for building annotated databases of nascent transcripts.
PMID 24304890 · Nucleic Acids Res · 2013
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73/100
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.
PMID 24555103 · F1000Res · 2013
L1
71/100
Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity.
PMID 23326238 · PLoS Genet · 2013
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49/100
Using random walks to identify cancer-associated modules in expression data.⚑
PMID 24128261 · BioData Min · 2013
not yet assessed
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio
PMID 24236165 · PLoS One · 2013
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82/100
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression.
PMID 23951250 · PLoS One · 2013
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67/100
Compression of structured high-throughput sequencing data.⚑
PMID 24260313 · PLoS One · 2013
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43/100
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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · BMC Genomics · 2013
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69/100
A global change in RNA polymerase II pausing during the Drosophila midblastula transition.
PMID 23951546 · Elife · 2013
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71/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.⚑
PMID 24324815 · PLoS One · 2013
L1
38/100
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FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
PMID 23768108 · BMC Bioinformatics · 2013
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65/100
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.⚑
PMID 22973536 · G3 (Bethesda) · 2012
L1
49/100
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RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
PMID 23145190 · PLoS Negl Trop Dis · 2012
L1
66/100
Free circular introns with an unusual branchpoint in neuronal projections.
PMID 31697236 · Elife · 2019
L1
99/100
A platinum standard pan-genome resource that represents the population structure of Asian rice.
PMID 32265447 · Sci Data · 2020
L1
99/100
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm.
PMID 33295865 · Microb Genom · 2020
L1
98/100
Energy, power, and infrastructure demands from electrifying airport ground support equipment at United States airports.
PMID 41912553 · Nat Commun · 2026
L1
95/100
Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments.
PMID 41657981 · Front Microbiol · 2026
L1
87/100
Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila.
PMID 32900993 · Nat Commun · 2020
L1
86/100
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
L1
85/100
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
PMID 33103064 · One Health Outlook · 2020
L1
85/100
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
L1
84/100
Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome.
PMID 33294007 · Evol Appl · 2020
L1
84/100
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
PMID 22955991 · Genome Res · 2012
L1
74/100
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · Nucleic Acids Res · 2011
L1
86/100
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).
PMID 22719821 · PLoS One · 2012
L1
78/100