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59 matching publication(s)
A comparative study of techniques for differential expression analysis on RNA-Seq data.
PMID 25119138 · PLoS One · 2014
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58/100
QTLs for heat-induced stomatal anatomy underpin gas exchange variation in field-grown wheat.
PMID 42231893 · Front Plant Sci · 2026
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100/100
Extensive variation between chromosomes of North American and European hop.
PMID 42204144 · Nat Commun · 2026
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87/100
Gli1-expressing stromal cells are highly reparative precursors of long-lived chondroprogenitors in the fetal murine limb.⚑
PMID 41253754 · Nat Commun · 2025
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10/100
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Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis).
PMID 40361012 · BMC Genomics · 2025
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80/100
NK2R control of energy expenditure and feeding to treat metabolic diseases.
PMID 39537932 · Nature · 2024
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87/100
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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50/100
Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.⚑
PMID 39009986 · Genet Sel Evol · 2024
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69/100
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Increased prevalence of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer.
PMID 38974967 · iScience · 2024
95/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach.
PMID 38253993 · BMC Bioinformatics · 2024
59/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues.
PMID 37995291 · Bioinformatics · 2023
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79/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data.
PMID 37994351 · F1000Res · 2023
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67/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.
PMID 37563310 · Nat Immunol · 2023
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93/100
Colocalization and potential interactions of Endozoicomonas and chlamydiae in microbial aggregates of the coral Pocillopora acuta<
PMID 37196086 · Sci Adv · 2023
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85/100
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
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74/100
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Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
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89/100
Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures.⚑
PMID 36527260 · Glia · 2022
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26/100
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Ten simple rules and a template for creating workflows-as-applications.
PMID 36520686 · PLoS Comput Biol · 2022
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No computation
Pharokka: a fast scalable bacteriophage annotation tool.
PMID 36453861 · Bioinformatics · 2023
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84/100
KARAJ: An Efficient Adaptive Multi-Processor Tool to Streamline Genomic and Transcriptomic Sequence Data Acquisition.
PMID 36430895 · Int J Mol Sci · 2022
57/100
sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.
PMID 36107768 · Nucleic Acids Res · 2022
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77/100
Bioinformatics Strategies to Identify Shared Molecular Biomarkers That Link Ischemic Stroke and Moyamoya Disease with Glioblastoma.⚑
PMID 36015199 · Pharmaceutics · 2022
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19/100
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BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification.
PMID 35704392 · Plant J · 2022
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94/100
A bioinformatic pipeline for simulating viral integration data.
PMID 35496474 · Data Brief · 2022
96/100
Long-Read RNA Sequencing Identifies Polyadenylation Elongation and Differential Transcript Usage of Host Transcripts During SARS-CoV-2 In Vitro Infection
PMID 35464437 · Front Immunol · 2022
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90/100
Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity.
PMID 35418127 · Sci Data · 2022
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87/100
Mucospheres produced by a mixotrophic protist impact ocean carbon cycling.
PMID 35288549 · Nat Commun · 2022
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58/100
A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58.
PMID 35115531 · Nat Commun · 2022
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95/100
ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout.
PMID 35100964 · Genet Sel Evol · 2022
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87/100
Environmental selection overturns the decay relationship of soil prokaryotic community over geographic distance across grassland biotas.⚑
PMID 35073255 · Elife · 2022
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57/100
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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100/100
An accurate method for identifying recent recombinants from unaligned sequences.
PMID 35025988 · Bioinformatics · 2022
L1
84/100
Single-Cell Transcriptome Profiling Reveals Multicellular Ecosystem of Nucleus Pulposus during Degeneration Progression.⚑
PMID 34825784 · Adv Sci (Weinh) · 2021
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59/100
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Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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Gene Dosage Analysis on the Single-Cell Transcriptomes Linking Cotranslational Protein Targeting to Metastatic Triple-Negative Breast Cancer.⚑
PMID 34577617 · Pharmaceuticals (Basel) · 2021
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53/100
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Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design.
PMID 34553212 · Gigascience · 2021
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87/100
Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.
PMID 34411106 · PLoS Genet · 2021
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No data access
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
PMID 34172000 · BMC Genomics · 2021
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74/100
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing.
PMID 34103501 · Nat Commun · 2021
L1
99/100
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity.
PMID 33837217 · Nat Commun · 2021
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68/100
Identification of Proteins Deregulated by Platinum-Based Chemotherapy as Novel Biomarkers and Therapeutic Targets in Non-Small Cell Lung Cancer.
PMID 33777753 · Front Oncol · 2021
81/100
The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.
PMID 33772001 · Nat Commun · 2021
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85/100
Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits.
PMID 33461502 · Genet Sel Evol · 2021
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90/100
aCLImatise: automated generation of tool definitions for bioinformatics workflows.
PMID 33325479 · Bioinformatics · 2021
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93/100
An Erg-driven transcriptional program controls B cell lymphopoiesis.
PMID 32541654 · Nat Commun · 2020
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81/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
PMID 32256520 · Front Genet · 2020
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50/100
Stem rust resistance in wheat is suppressed by a subunit of the mediator complex.
PMID 32111840 · Nat Commun · 2020
L1
95/100