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32 matching publication(s)
TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
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61/100
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.⚑
PMID 25506420 · F1000Res · 2013
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42/100
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Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.
PMID 24555103 · F1000Res · 2013
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71/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets.
PMID 41226816 · Int J Mol Sci · 2025
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84/100
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.
PMID 40926267 · Genome Biol · 2025
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99/100
Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
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65/100
Dynamic interaction of MYC enhancer RNA with YEATS2 protein regulates MYC gene transcription in pancreatic cancer.
PMID 40216980 · EMBO Rep · 2025
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Identification and validation of a metabolic-related gene risk model predicting the prognosis of lung, colon, and breast cancers.
PMID 39779736 · Sci Rep · 2025
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Increased prevalence of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer.
PMID 38974967 · iScience · 2024
95/100
Analytical code sharing practices in biomedical research.
PMID 38983240 · PeerJ Comput Sci · 2024
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92/100
Proneural-mesenchymal antagonism dominates the patterns of phenotypic heterogeneity in glioblastoma.
PMID 38433919 · iScience · 2024
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100/100
Mutually exclusive teams-like patterns of gene regulation characterize phenotypic heterogeneity along the noradrenergic-mesenchymal axis in neuroblastoma.
PMID 38230570 · Cancer Biol Ther · 2024
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87/100
A systems-level analysis of the mutually antagonistic roles of RKIP and BACH1 in dynamics of cancer cell plasticity.
PMID 37963558 · J R Soc Interface · 2023
95/100
Application of Machine Learning in Predicting Hepatic Metastasis or Primary Site in Gastroenteropancreatic Neuroendocrine Tumors.⚑
PMID 37887568 · Curr Oncol · 2023
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59/100
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Identification of herpesvirus transcripts from genomic regions around the replication origins.
PMID 37773348 · Sci Rep · 2023
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59/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
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78/100
Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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96/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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59/100
iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data.
PMID 35899080 · NAR Genom Bioinform · 2022
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58/100
Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition.⚑
PMID 35819852 · J Clin Invest · 2022
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68/100
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Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.
PMID 35605195 · Plant Commun · 2022
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95/100
The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible.
PMID 35138128 · mSphere · 2022
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90/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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100/100
Epigenetic loss of heterogeneity from low to high grade localized prostate tumours.
PMID 34911933 · Nat Commun · 2021
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79/100
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.⚑
PMID 34805989 · NAR Genom Bioinform · 2021
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54/100
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miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles.
PMID 34637468 · PLoS One · 2021
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A mechanistic model captures the emergence and implications of non-genetic heterogeneity and reversible drug resistance in ER+ breast cancer cells.
PMID 34316714 · NAR Cancer · 2021
85/100
Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress⚑
PMID 34089405 · Rice (N Y) · 2021
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43/100
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Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.
PMID 33729159 · Elife · 2021
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94/100
Meta-analysis of gene expression profiles of lean and obese PCOS to identify differentially regulated pathways and risk of comorbidities.
PMID 32695266 · Comput Struct Biotechnol J · 2020
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78/100
Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarra
PMID 29157210 · BMC Plant Biol · 2017
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91/100