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293 matching publication(s)
Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection.
PMID 25057820 · PLoS Genet · 2014
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78/100
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
PMID 25391375 · Genome Res · 2014
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80/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
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76/100
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
PMID 25202605 · Appl Plant Sci · 2014
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87/100
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells.
PMID 24926665 · PLoS One · 2014
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87/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
PMID 24888378 · BMC Genomics · 2014
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77/100
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data.
PMID 24747190 · Genomics Proteomics Bioinformatics · 2014
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Transcriptome analysis reveals differential splicing events in IPF lung tissue.
PMID 24647608 · PLoS One · 2014
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81/100
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio
PMID 24236165 · PLoS One · 2013
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82/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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76/100
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.
PMID 23979935 · G3 (Bethesda) · 2013
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91/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
Free circular introns with an unusual branchpoint in neuronal projections.
PMID 31697236 · Elife · 2019
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99/100
Energy, power, and infrastructure demands from electrifying airport ground support equipment at United States airports.
PMID 41912553 · Nat Commun · 2026
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95/100
Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments.
PMID 41657981 · Front Microbiol · 2026
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87/100
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
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85/100
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
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84/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · Nucleic Acids Res · 2011
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86/100
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).
PMID 22719821 · PLoS One · 2012
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78/100
Digital sorting of complex tissues for cell type-specific gene expression profiles.
PMID 23497278 · BMC Bioinformatics · 2013
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85/100
Hobbes: optimized gram-based methods for efficient read alignment.
PMID 22199254 · Nucleic Acids Res · 2011
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83/100
Extensive variation between chromosomes of North American and European hop.
PMID 42204144 · Nat Commun · 2026
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87/100
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity.
PMID 42147490 · Cell Press Blue · 2026
85/100
Sediment Resuspension as a System-Wide Driver of Legacy and Bioavailable Phosphorus Release in Lake Erie.
PMID 41960750 · Environ Sci Technol · 2026
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Hippo signaling differentially regulates distal progenitor subpopulations and their transitional states to construct the mammalian lungs.
PMID 41932885 · Nat Commun · 2026
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A conserved glycan motif induces broadly reactive functional antibodies against the zoonotic pathogen Streptococcus suis.
PMID 41880495 · Sci Adv · 2026
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77/100
Endothelial Adgrl2 Expression and Alternative Splicing Controls the Cerebrovasculature.
PMID 41876233 · J Neurosci · 2026
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Metatranscriptomics-based investigation of bacterial community dynamics across a dissolved organic matter gradient in southern Lake Michigan.
PMID 41860215 · Appl Environ Microbiol · 2026
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81/100
Exploring Gene Expression Patterns in Alzheimer's Disease Using a Human Microarray Data Meta-Analysis.
PMID 41744654 · Biology (Basel) · 2026
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100/100
Single-cell protein activity analysis reveals aberrant myogenesis and IGF2-PI3K pathway dependencies in MYOD1-mutant rhabdomyosarcoma.
PMID 41758938 · Sci Adv · 2026
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Evolution of Highly Repetitive Silk Genes in the Luna Moth, Actias luna.
PMID 41738778 · Genome Biol Evol · 2026
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stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.
PMID 41692960 · Bioinformatics · 2026
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75/100
DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
PMID 41673887 · Genome Biol · 2026
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80/100
Identity rather than 3D position informs splicing of rare introns in the human genome.
PMID 41561379 · iScience · 2025
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98/100
Distinct sympathetic projections to brown fat regulate thermogenesis and glucose tolerance.
PMID 41559445 · Nat Metab · 2026
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85/100
Accurate chromatin marks peak calling with Omnipeak.
PMID 41521664 · Nucleic Acids Res · 2026
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77/100
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · Nucleic Acids Res · 2026
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78/100
Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates.
PMID 41350938 · EMBO J · 2025
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78/100
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues.
PMID 41298871 · Nat Cell Biol · 2025
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A four-gene signature from blood to exclude bacterial etiology of lower respiratory tract infection in adults.
PMID 41285807 · Nat Commun · 2025
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94/100
Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarum.
PMID 41212030 · mBio · 2025
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86/100
Recombination events restored the functional horned haplotypes in the offspring of polled parents.
PMID 41174470 · Genet Sel Evol · 2025
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98/100
Missense variants in human forkhead transcription factors reveal determinants of forkhead DNA bispecificity.
PMID 41124077 · Cell Rep · 2025
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92/100
Single-cell dissection of chronic lung allograft dysfunction reveals convergent and distinct fibrotic mechanisms.
PMID 41122970 · JCI Insight · 2025
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75/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments.
PMID 41055236 · RNA Biol · 2025
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100/100
Genomics Define Malignant Transformation in Myeloma Precursor Conditions.
PMID 41061199 · J Clin Oncol · 2025
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78/100