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1193 matching publication(s)
RNA-sequence analysis of primary alveolar macrophages after in vitro infection with porcine reproductive and respiratory syndrome virus strains of differing vir⚑
PMID 24643046 · PLoS One · 2014
41/100
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Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.
PMID 25520726 · Front Plant Sci · 2014
93/100
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence.
PMID 24558256 · Genome Biol Evol · 2014
50/100
A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.
PMID 25009556 · Front Genet · 2014
67/100
Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection.
PMID 25057820 · PLoS Genet · 2014
L1
78/100
Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.⚑
PMID 25273863 · G3 (Bethesda) · 2014
L1
58/100
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TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.
PMID 25391375 · Genome Res · 2014
L1
80/100
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.
PMID 25122667 · G3 (Bethesda) · 2014
L1
50/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
L1
76/100
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
PMID 25202605 · Appl Plant Sci · 2014
L1
87/100
OptiType: precision HLA typing from next-generation sequencing data.
PMID 25143287 · Bioinformatics · 2014
L1
95/100
A comparative study of techniques for differential expression analysis on RNA-Seq data.
PMID 25119138 · PLoS One · 2014
L1
58/100
Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function.
PMID 24885615 · BMC Genomics · 2014
L1
50/100
High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.
PMID 25122613 · Genome Res · 2014
L1
87/100
Comprehensive transcriptome study to develop molecular resources of the copepod Calanus sinicus for their potential ecological applications.⚑
PMID 24982883 · Biomed Res Int · 2014
L1
61/100
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Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain.
PMID 24992200 · PLoS Pathog · 2014
L1
63/100
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells.
PMID 24926665 · PLoS One · 2014
L1
87/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
PMID 24888378 · BMC Genomics · 2014
L1
77/100
Minimal metabolic pathway structure is consistent with associated biomolecular interactions.
PMID 24987116 · Mol Syst Biol · 2014
L1
30/100
TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
L1
61/100
Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
L1
59/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
L1
79/100
Metatranscriptomics of the human oral microbiome during health and disease.
PMID 24692635 · mBio · 2014
L1
62/100
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.).
PMID 24598808 · PLoS One · 2014
L1
58/100
Rbfox2 controls autoregulation in RNA-binding protein networks.⚑
PMID 24637117 · Genes Dev · 2014
L1
48/100
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Polyploidy and the petal transcriptome of Gossypium.
PMID 24393201 · BMC Plant Biol · 2014
L1
51/100
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data.
PMID 24747190 · Genomics Proteomics Bioinformatics · 2014
L1
90/100
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
PMID 24709818 · Genome Res · 2014
L1
68/100
Transcriptome analysis reveals differential splicing events in IPF lung tissue.
PMID 24647608 · PLoS One · 2014
L1
81/100
HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
PMID 24475057 · PLoS One · 2014
L1
66/100
Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color.
PMID 24400075 · PLoS One · 2014
L1
74/100
Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to Lead (Pb) stress with next generation sequencin⚑
PMID 23840502 · PLoS One · 2013
L1
27/100
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Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.⚑
PMID 23536903 · PLoS One · 2013
L1
45/100
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The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.⚑
PMID 25506420 · F1000Res · 2013
L1
42/100
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Does excitatory fronto-extracerebral tDCS lead to improved working memory performance?
PMID 24555105 · F1000Res · 2013
L1
61/100
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.⚑
PMID 24627795 · F1000Res · 2013
L1
43/100
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Vespucci: a system for building annotated databases of nascent transcripts.
PMID 24304890 · Nucleic Acids Res · 2013
L1
73/100
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
PMID 24715956 · F1000Res · 2013
L1
67/100
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.
PMID 24555103 · F1000Res · 2013
L1
71/100
Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity.
PMID 23326238 · PLoS Genet · 2013
L1
49/100
Quantitative epigenetic co-variation in CpG islands and co-regulation of developmental genes.
PMID 23999385 · Sci Rep · 2013
L1
95/100
Using random walks to identify cancer-associated modules in expression data.⚑
PMID 24128261 · BioData Min · 2013
not yet assessed
Genomic and transcriptomic plasticity in treatment-naive ovarian cancer.
PMID 24221193 · Genome Res · 2013
L1
30/100
Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid.
PMID 24289302 · BMC Genomics · 2013
L1
63/100
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio
PMID 24236165 · PLoS One · 2013
L1
82/100
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression.
PMID 23951250 · PLoS One · 2013
L1
67/100
Compression of structured high-throughput sequencing data.⚑
PMID 24260313 · PLoS One · 2013
L1
43/100
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