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27 matching publication(s)

Publication	Journal	Year	Score	Verdict
Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function. PMID 24885615	BMC Genomics	2014	50	L1 50/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling. PMID 24888378	BMC Genomics	2014	77	L1 77/100
Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid. PMID 24289302	BMC Genomics	2013	63	L1 63/100
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. PMID 23496952	BMC Genomics	2013	69	L1 69/100
Whole-genome analysis of a multidrug-resistant Klebsiella michiganensis environmental isolate from an orthopedic ward in Mwanza, Tanzania reveals IncF-family pl PMID 41957580	BMC Genomics	2026	82	L1 82/100
Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis). PMID 40361012	BMC Genomics	2025	80	L1 80/100
Data-driven projections of candidate enhancer-activating SNPs in immune regulation. PMID 40011812	BMC Genomics	2025	57	L1 57/100
The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary PMID 38245722	BMC Genomics	2024	100	L1 100/100
Exploring microproteins from various model organisms using the mip-mining database. PMID 37919660	BMC Genomics	2023	85	L1 85/100
A newly identified glycosyltransferase AsRCOM provides resistance to purple curl leaf disease in agave. PMID 37936069	BMC Genomics	2023	—	L1 No data access
Wochenende - modular and flexible alignment-based shotgun metagenome analysis. PMID 36368923	BMC Genomics	2022	88	L1 88/100
Towards reliable whole genome sequencing for outbreak preparedness and response. PMID 35945497	BMC Genomics	2022	84	L1 84/100
Systematic analysis of CNGCs in cotton and the positive role of GhCNGC32 and GhCNGC35 in salt tolerance. PMID 35931984	BMC Genomics	2022	—	not yet assessed
TC-hunter: identification of the insertion site of a transgenic gene within the host genome. PMID 35184734	BMC Genomics	2022	69	L1 69/100
ScLRTC: imputation for single-cell RNA-seq data via low-rank tensor completion. PMID 34844559	BMC Genomics	2021	85	L1 85/100
A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans. PMID 34740326	BMC Genomics	2021	95	L1 95/100
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. PMID 34172000	BMC Genomics	2021	74	L1 74/100
WASP: a versatile, web-accessible single cell RNA-Seq processing platform. PMID 33736596	BMC Genomics	2021	59	L1 59/100
Functional module detection through integration of single-cell RNA sequencing data with protein-protein interaction networks. PMID 33138772	BMC Genomics	2020	83	L1 83/100
SOX10-regulated promoter use defines isoform-specific gene expression in Schwann cells. PMID 32770939	BMC Genomics	2020	94	L1 94/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments. ⚑ PMID 32093613	BMC Genomics	2020	62	L1 62/100 ⚑
From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy. PMID 31830909	BMC Genomics	2019	88	L1 88/100
Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing. PMID 30208848	BMC Genomics	2018	50	50/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads. ⚑ PMID 26945881	BMC Genomics	2016	58	58/100 ⚑
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance. PMID 25943316	BMC Genomics	2015	73	73/100