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21 matching publication(s)

Publication	Journal	Year	Score	Verdict
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization. PMID 25254103	F1000Res	2014	76	L1 76/100
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. ⚑ PMID 25506420	F1000Res	2013	42	L1 42/100 ⚑
Bayesian prediction of microbial oxygen requirement. PMID 26913185	F1000Res	2013	76	L1 76/100
Does excitatory fronto-extracerebral tDCS lead to improved working memory performance? PMID 24555105	F1000Res	2013	61	L1 61/100
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics. ⚑ PMID 24627795	F1000Res	2013	43	L1 43/100 ⚑
taxize: taxonomic search and retrieval in R. ⚑ PMID 24555091	F1000Res	2013	30	L1 30/100 ⚑
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages. PMID 24715956	F1000Res	2013	67	L1 67/100
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. PMID 24555103	F1000Res	2013	71	L1 71/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data. PMID 37994351	F1000Res	2023	67	L1 67/100
A2TEA: Identifying trait-specific evolutionary adaptations. PMID 37224329	F1000Res	2022	90	L1 90/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. PMID 36262335	F1000Res	2022	59	L1 59/100
Antibiotic Drug screening and Image Characterization Toolbox (A.D.I.C.T.): a robust imaging workflow to monitor antibiotic stress response in bacterial cells <i PMID 35707454	F1000Res	2021	88	L1 88/100
Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality. PMID 35136576	F1000Res	2021	98	L1 98/100
snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data. ⚑ PMID 34900230	F1000Res	2021	67	L1 67/100 ⚑
Sustainable data analysis with Snakemake. PMID 34035898	F1000Res	2021	71	L1 71/100
Fluent genomics with plyranges and tximeta. PMID 32528659	F1000Res	2020	69	L1 69/100
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive. PMID 31114675	F1000Res	2019	90	L1 90/100
Easy and efficient ensemble gene set testing with EGSEA. PMID 29333246	F1000Res	2017	97	L1 97/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes. PMID 36875992	F1000Res	2022	67	L1 67/100