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13 matching publication(s)
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
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90/100
MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
L1
80/100
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Spatial information matters: are traditional imputation methods effective for spatial transcriptomics data?
PMID 41627342 · Brief Bioinform · 2026
L1
89/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm.⚑
PMID 41499218 · Brief Bioinform · 2026
L1
53/100
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scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification.
PMID 40501071 · Brief Bioinform · 2025
L1
62/100
Comprehensive benchmarking of large language models for RNA secondary structure prediction.
PMID 40205851 · Brief Bioinform · 2025
L1
88/100
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering.
PMID 40131310 · Brief Bioinform · 2025
L1
85/100
Detecting tipping points of complex diseases by network information entropy.
PMID 38960408 · Brief Bioinform · 2024
L1
78/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
L1
60/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque
PMID 36681937 · Brief Bioinform · 2023
L1
94/100
binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.
PMID 36239393 · Brief Bioinform · 2022
L1
67/100
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.
PMID 36088548 · Brief Bioinform · 2022
L1
94/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx.
PMID 34254998 · Brief Bioinform · 2021
L1
79/100