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225 matching publication(s)
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
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85/100
A2TEA: Identifying trait-specific evolutionary adaptations.
PMID 37224329 · F1000Res · 2022
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90/100
A workflow reproducibility scale for automatic validation of biological interpretation results.
PMID 37150537 · Gigascience · 2022
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100/100
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
PMID 36810800 · Gigascience · 2022
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50/100
A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.
PMID 36748417 · Microb Genom · 2022
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75/100
TOSCA: an automated Tumor Only Somatic CAlling workflow for somatic mutation detection without matched normal samples.
PMID 36699358 · Bioinform Adv · 2022
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50/100
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
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78/100
Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism.
PMID 36660474 · iScience · 2022
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71/100
Transcriptomic analysis unravels the molecular response of Lonicera japonica leaves to chilling stress.
PMID 36618608 · Front Plant Sci · 2022
75/100
Transcriptome profiling of osteoclast subsets associated with arthritis: A pathogenic role of CCR2hi osteoclast progenitors.
PMID 36591261 · Front Immunol · 2022
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50/100
Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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89/100
LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
PMID 36576131 · Gigascience · 2022
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86/100
Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice.
PMID 36553546 · Genes (Basel) · 2022
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67/100
Oxidative stress protection and growth promotion activity of Pseudomonas mercuritolerans sp. nov., in forage plants under mercury abiotic stress conditio⚑
PMID 36560952 · Front Microbiol · 2022
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54/100
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Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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100/100
Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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96/100
Disentangling the causal relationship between rabbit growth and cecal microbiota through structural equation models.
PMID 36536288 · Genet Sel Evol · 2022
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93/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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67/100
Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures.⚑
PMID 36527260 · Glia · 2022
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26/100
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Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
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99/100
Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease.
PMID 36518809 · Comput Intell Neurosci · 2022
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74/100
hgtseq: A Standard Pipeline to Study Horizontal Gene Transfer.
PMID 36498841 · Int J Mol Sci · 2022
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63/100
Ten simple rules and a template for creating workflows-as-applications.
PMID 36520686 · PLoS Comput Biol · 2022
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No computation
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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93/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
PMID 36472574 · Gigascience · 2022
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78/100
Comprehensive comparison of gene expression diversity among a variety of human stem cells.
PMID 36458020 · NAR Genom Bioinform · 2022
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71/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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70/100
Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.
PMID 36450262 · Cell Rep · 2022
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50/100
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions.
PMID 36451166 · Genome Biol · 2022
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50/100
Specific signature biomarkers highlight the potential mechanisms of circulating neutrophils in aneurysmal subarachnoid hemorrhage.
PMID 36438795 · Front Pharmacol · 2022
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80/100
Comprehensive Transcriptome Analysis Reveals Genome-Wide Changes Associated with Endoplasmic Reticulum (ER) Stress in Potato (Solanum tuberosum L.).
PMID 36430273 · Int J Mol Sci · 2022
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62/100
KARAJ: An Efficient Adaptive Multi-Processor Tool to Streamline Genomic and Transcriptomic Sequence Data Acquisition.
PMID 36430895 · Int J Mol Sci · 2022
57/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
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50/100
Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
Modulation of HERV Expression by Four Different Encephalitic Arboviruses during Infection of Human Primary Astrocytes.⚑
PMID 36423114 · Viruses · 2022
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56/100
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N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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55/100
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RNA Editing Alterations Define Disease Manifestations in the Progression of Experimental Autoimmune Encephalomyelitis (EAE).⚑
PMID 36429012 · Cells · 2022
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37/100
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What the Phage: a scalable workflow for the identification and analysis of phage sequences.
PMID 36399058 · Gigascience · 2022
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76/100
Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing.
PMID 36401180 · Genet Sel Evol · 2022
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50/100
CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids.
PMID 36396635 · Nat Commun · 2022
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50/100
Inferring a spatial code of cell-cell interactions across a whole animal body.
PMID 36395331 · PLoS Comput Biol · 2022
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90/100
The seeker R package: simplified fetching and processing of transcriptome data.
PMID 36389425 · PeerJ · 2022
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84/100
MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data.
PMID 36386613 · Front Microbiol · 2022
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83/100
Genetic architecture of natural variation of cardiac performance from flies to humans.
PMID 36383075 · Elife · 2022
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74/100
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.
PMID 36373634 · Nucleic Acids Res · 2022
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68/100
Wochenende - modular and flexible alignment-based shotgun metagenome analysis.
PMID 36368923 · BMC Genomics · 2022
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88/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis.
PMID 36352408 · BMC Biol · 2022
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84/100
Heterogeneity and Differentiation Trajectories of Infiltrating CD8+ T Cells in Lung Adenocarcinoma.⚑
PMID 36358600 · Cancers (Basel) · 2022
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67/100
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Shared and unique phosphoproteomics responses in skeletal muscle from exercise models and in hyperammonemic myotubes.
PMID 36345342 · iScience · 2022
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100/100
Spatially resolved phosphoproteomics reveals fibroblast growth factor receptor recycling-driven regulation of autophagy and survival.
PMID 36329028 · Nat Commun · 2022
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87/100