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144 matching publication(s)

Publication	Journal	Year	Score	Verdict
Widespread allele-specific topological domains in the human genome are not confined to imprinted gene clusters. PMID 36869353	Genome Biol	2023	64	L1 64/100
Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver PMID 36864379	Genet Sel Evol	2023	100	L2 100/100
Bulk and single-cell characterisation of the immune heterogeneity of atherosclerosis identifies novel targets for immunotherapy. PMID 36855107	BMC Biol	2023	70	L2 70/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network. PMID 36855106	BMC Med Genomics	2023	86	L2 86/100
Shifts from cooperative to individual-based predation defense determine microbial predator-prey dynamics. PMID 36854789	ISME J	2023	84	L1 84/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer. PMID 36851919	Comput Struct Biotechnol J	2023	78	L2 78/100
Gene Regulatory Interactions at Lamina-Associated Domains. ⚑ PMID 36833261	Genes (Basel)	2023	31	L1 31/100 ⚑
Evaluating native-like structures of RNA-protein complexes through the deep learning method. PMID 36828844	Nat Commun	2023	67	L1 67/100
Enteroendocrine cell lineages that differentially control feeding and gut motility. PMID 36810133	Elife	2023	88	L1 88/100
Social complexity, life-history and lineage influence the molecular basis of castes in vespid wasps. ⚑ PMID 36828829	Nat Commun	2023	52	L1 52/100 ⚑
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. PMID 36828587	Genome Res	2023	—	L1 No computation
GSDME-mediated pyroptosis promotes the progression and associated inflammation of atherosclerosis. PMID 36807553	Nat Commun	2023	85	85/100
Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD. PMID 36762572	Adv Sci (Weinh)	2023	81	L1 81/100
Utilizing the codon adaptation index to evaluate the susceptibility to HIV-1 and SARS-CoV-2 related coronaviruses in possible target cells in humans. PMID 36760235	Front Cell Infect Microbiol	2023	71	L1 71/100
polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies. PMID 36792366	Genome Biol Evol	2023	71	L1 71/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans. PMID 36752777	Microb Genom	2023	89	L1 89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans. PMID 36737102	RNA	2023	88	L1 88/100
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis. ⚑ PMID 36725967	Sci Rep	2023	74	L1 74/100 ⚑
A chromosome-level genome assembly of Plantago ovata. PMID 36707685	Sci Rep	2023	99	L1 99/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PMID 36719906	PLoS Comput Biol	2023	98	L1 98/100
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples. PMID 36721781	PeerJ	2023	50	L1 50/100
nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs. PMID 36694127	BMC Bioinformatics	2023	76	L1 76/100
High-resolution metagenomic reconstruction of the freshwater spring bloom. PMID 36698172	Microbiome	2023	69	L1 69/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. PMID 36696508	Sci Adv	2023	50	L2 50/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque PMID 36681937	Brief Bioinform	2023	94	L1 94/100
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients. PMID 36694043	Commun Biol	2023	83	L1 83/100
Artificial intelligence-guided discovery of gastric cancer continuum. PMID 36692601	Gastric Cancer	2023	71	L1 71/100
Population Genomic Analyses Suggest a Hybrid Origin, Cryptic Sexuality, and Decay of Genes Regulating Seed Development for the Putatively Strictly Asexual Ki ⚑ PMID 36674965	Int J Mol Sci	2023	51	51/100 ⚑
Genomic insight into the influence of selection, crossbreeding, and geography on population structure in poultry. PMID 36670351	Genet Sel Evol	2023	100	L1 100/100
In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma. PMID 36650150	Nat Commun	2023	96	L1 96/100
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori PMID 36645269	Microbiol Spectr	2023	93	93/100
The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2. PMID 36627412	Cell Mol Life Sci	2023	59	L1 59/100
A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection. PMID 36609152	STAR Protoc	2023	92	L1 92/100
Transcriptomic Study on the Lungs of Broilers with Ascites Syndrome. PMID 36611783	Animals (Basel)	2023	71	L1 71/100
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. ⚑ PMID 36611079	NPJ Precis Oncol	2023	—	L1 No data access ⚑
Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy. PMID 36596305	Cell Host Microbe	2023	80	L1 80/100
β-Catenin activity induces an RNA biosynthesis program promoting therapy resistance in T-cell acute lymphoblastic leukemia. ⚑ PMID 36597789	EMBO Mol Med	2023	65	L1 65/100 ⚑
TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data. ⚑ PMID 36469333	Bioinformatics	2023	43	L1 43/100 ⚑
MirDIP 5.2: tissue context annotation and novel microRNA curation. PMID 36453996	Nucleic Acids Res	2023	89	L1 89/100
Pharokka: a fast scalable bacteriophage annotation tool. PMID 36453861	Bioinformatics	2023	84	L1 84/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. PMID 36350658	Nucleic Acids Res	2023	84	L1 84/100
Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi. PMID 36305682	G3 (Bethesda)	2023	85	L1 85/100
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. PMID 36321867	Bioinformatics	2023	67	L1 67/100
Intra-Host Co-Existing Strains of SARS-CoV-2 Reference Genome Uncovered by Exhaustive Computational Search. PMID 37243151	Viruses	2023	100	L1 100/100