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193 matching publication(s)
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production.
PMID 37223250 · Microlife · 2021
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Antibiotic Drug screening and Image Characterization Toolbox (A.D.I.C.T.): a robust imaging workflow to monitor antibiotic stress response in bacterial cells <i
PMID 35707454 · F1000Res · 2021
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nf-rnaSeqCount: A Nextflow pipeline for obtaining raw read counts from RNA-seq data.
PMID 35574063 · S Afr Comput J · 2021
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Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality.
PMID 35136576 · F1000Res · 2021
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Temporal trends in methane emissions from a small eutrophic reservoir: the key role of a spring burst.
PMID 35126532 · Biogeosciences · 2021
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight.
PMID 35028613 · Cell Rep Med · 2021
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The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation.
PMID 34938960 · FASEB Bioadv · 2021
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Assessing Bos taurus introgression in the UOA Bos indicus assembly.
PMID 34922445 · Genet Sel Evol · 2021
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Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform.
PMID 34927664 · Genet Mol Biol · 2021
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Epigenetic loss of heterogeneity from low to high grade localized prostate tumours.
PMID 34911933 · Nat Commun · 2021
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Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
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An archaeal histone-like protein regulates gene expression in response to salt stress.
PMID 34883507 · Nucleic Acids Res · 2021
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FEM: mining biological meaning from cell level in single-cell RNA sequencing data.
PMID 34909283 · PeerJ · 2021
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snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data.⚑
PMID 34900230 · F1000Res · 2021
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RNA modifications detection by comparative Nanopore direct RNA sequencing.
PMID 34893601 · Nat Commun · 2021
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ScLRTC: imputation for single-cell RNA-seq data via low-rank tensor completion.
PMID 34844559 · BMC Genomics · 2021
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Candidates for Balancing Selection in Leishmania donovani Complex Parasites.
PMID 34865011 · Genome Biol Evol · 2021
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Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models.
PMID 34858485 · Front Genet · 2021
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Phosphorylation of ribosomal protein S6 differentially affects mRNA translation based on ORF length.
PMID 34871442 · Nucleic Acids Res · 2021
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Aryl Hydrocarbon Receptor (AhR) Activation by 2,3,7,8-Tetrachlorodibenzo-p-Dioxin (TCDD) Dose-Dependently Shifts the Gut Microbiome Consistent with the P
PMID 34830313 · Int J Mol Sci · 2021
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Single-Cell Transcriptome Profiling Reveals Multicellular Ecosystem of Nucleus Pulposus during Degeneration Progression.⚑
PMID 34825784 · Adv Sci (Weinh) · 2021
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Population differentiation and epidemic tracking of Bursaphelenchus xylophilus in China based on chromosome-level assembly and whole-genome sequencing data.⚑
PMID 34839581 · Pest Manag Sci · 2021
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Defactinib inhibits PYK2 phosphorylation of IRF5 and reduces intestinal inflammation.
PMID 34795257 · Nat Commun · 2021
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Target identification for repurposed drugs active against SARS-CoV-2 via high-throughput inverse docking.
PMID 34825285 · J Comput Aided Mol Des · 2021
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EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics.⚑
PMID 34805989 · NAR Genom Bioinform · 2021
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Loss of mutual protection between human osteoclasts and chondrocytes in damaged joints initiates osteoclast-mediated cartilage degradation by MMPs.
PMID 34811438 · Sci Rep · 2021
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An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation.
PMID 34772928 · Nat Commun · 2021
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Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
PMID 34773081 · Commun Biol · 2021
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Lamin C is required to establish genome organization after mitosis.
PMID 34775987 · Genome Biol · 2021
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Expression of neurofibromin 1 in colorectal cancer and cetuximab resistance.
PMID 34779495 · Oncol Rep · 2021
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A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans.
PMID 34740326 · BMC Genomics · 2021
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Phase transition specified by a binary code patterns the vertebrate eye cup.
PMID 34757798 · Sci Adv · 2021
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Essential Genes of Vibrio anguillarum and Other Vibrio spp. Guide the Development of New Drugs and Vaccines.
PMID 34745063 · Front Microbiol · 2021
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Design considerations for workflow management systems use in production genomics research and the clinic.
PMID 34737383 · Sci Rep · 2021
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Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes.
PMID 34742227 · Genet Sel Evol · 2021
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Pathway-targeting gene matrix for Drosophila gene set enrichment analysis.
PMID 34710184 · PLoS One · 2021
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Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia.
PMID 34709177 · Elife · 2021
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Vascular adhesion protein-1 defines a unique subpopulation of human hematopoietic stem cells and regulates their proliferation.
PMID 34719737 · Cell Mol Life Sci · 2021
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Phased differentiation of γδ T and T CD8 tumor-infiltrating lymphocytes revealed by single-cell transcriptomics of human cancers.⚑
PMID 34721945 · Oncoimmunology · 2021
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FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow.
PMID 34681040 · Genes (Basel) · 2021
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A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ASFV Epidemics in Sardinia (Italy) through Extensive Genomic Sequencing.
PMID 34696424 · Viruses · 2021
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Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets.
PMID 34690959 · Front Microbiol · 2021
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Bioavailable Nutrients (N and P) and Precipitation Patterns Drive Cyanobacterial Blooms in Missisquoi Bay, Lake Champlain.
PMID 34683418 · Microorganisms · 2021
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Calibration-free NGS quantitation of mutations below 0.01% VAF.
PMID 34675197 · Nat Commun · 2021
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Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.
PMID 34680427 · Biomedicines · 2021
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Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses.
PMID 34675242 · Sci Rep · 2021
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Reverse Engineering of the Pediatric Sepsis Regulatory Network and Identification of Master Regulators.
PMID 34680414 · Biomedicines · 2021
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Pathway signatures derived from on-treatment tumor specimens predict response to anti-PD1 blockade in metastatic melanoma.
PMID 34654806 · Nat Commun · 2021
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Chromosome-Scale Assembly of the Complete Genome Sequence of Porcisia hertigi, Isolate C119, Strain LV43.
PMID 34647802 · Microbiol Resour Announc · 2021
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