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86 matching publication(s)

Publication	Journal	Year	Score	Verdict
Exploring the role and mechanism of Astragalus membranaceus and radix paeoniae rubra in idiopathic pulmonary fibrosis through network pharmacology and experimen ⚑ PMID 37666859	Sci Rep	2023	20	L1 20/100 ⚑
Identification of a novel lncRNA prognostic signature and analysis of functional lncRNA AC115619.1 in hepatocellular carcinoma. PMID 37614318	Front Pharmacol	2023	87	L1 87/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. PMID 37478378	Brief Bioinform	2023	60	L1 60/100
Cell-type annotation with accurate unseen cell-type identification using multiple references. PMID 37379341	PLoS Comput Biol	2023	68	L1 68/100
A global database for modeling tumor-immune cell communication. PMID 37438390	Sci Data	2023	66	L1 66/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network. PMID 36855106	BMC Med Genomics	2023	86	L2 86/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque PMID 36681937	Brief Bioinform	2023	94	L1 94/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers. PMID 36440209	Front Endocrinol (Lausanne)	2022	50	L1 50/100
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle. PMID 36057548	Genet Sel Evol	2022	90	L1 90/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. PMID 35494238	iScience	2022	60	L1 60/100
Integrated Analysis of Multiple Microarrays Based on Raw Data Identified Novel Gene Signatures in Recurrent Implantation Failure. PMID 35197930	Front Endocrinol (Lausanne)	2022	85	L1 85/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
FEM: mining biological meaning from cell level in single-cell RNA sequencing data. PMID 34909283	PeerJ	2021	75	L1 75/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases. ⚑ PMID 34601390	Comput Biol Med	2021	69	L1 69/100 ⚑
Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning. PMID 34575658	J Pers Med	2021	86	L1 86/100
Weighted gene co-expression network analysis reveals that CXCL10, IRF7, MX1, RSAD2, and STAT1 are related to the chronic stage of spinal cord injury. ⚑ PMID 34532385	Ann Transl Med	2021	44	44/100 ⚑
Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods. PMID 34143800	PLoS One	2021	75	L1 75/100
Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies. PMID 34107850	Bioengineered	2021	55	L1 55/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening. PMID 33397809	Proc Natl Acad Sci U S A	2021	48	L1 48/100
Qualitative Transcriptional Signature for the Pathological Diagnosis of Pancreatic Cancer. PMID 33173782	Front Mol Biosci	2020	71	L1 71/100
Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality. PMID 32681306	Curr Genet	2020	81	L1 81/100
Integrated omics in Drosophila uncover a circadian kinome. PMID 32483184	Nat Commun	2020	98	L1 98/100
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. PMID 32111252	Genome Med	2020	91	L1 91/100
All of gene expression (AOE): An integrated index for public gene expression databases. ⚑ PMID 31978081	PLoS One	2020	—	not yet assessed
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
RNA structure maps across mammalian cellular compartments. ⚑ PMID 30886404	Nat Struct Mol Biol	2019	45	L1 45/100 ⚑
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. PMID 30744683	Genome Biol	2019	97	L1 97/100
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye. PMID 30010758	Gigascience	2018	91	L1 91/100
De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform. ⚑ PMID 29451882	PLoS One	2018	45	L1 45/100 ⚑
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID 27867804	Biosci Microbiota Food Health	2016	89	L1 89/100
Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case. PMID 26286638	Sci Rep	2015	76	L1 76/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100