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42 matching publication(s)

Publication	Journal	Year	Score	Verdict
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing. PMID 38877886	Brief Bioinform	2024	90	L1 90/100
Identification of succinylation-related genes in bladder cancer: integration of single-cell and transcriptomic data. PMID 42220482	Front Immunol	2026	78	L1 78/100
Integrative transcriptomic and machine learning framework reveals candidate genes and potential mechanisms of aflatoxin B1 exposure in breast cancer. PMID 41688730	Sci Rep	2026	83	L1 83/100
Chromosome-level genome assembly of agar-producing red seaweed Gracilaria vermiculophylla. PMID 41629338	Sci Data	2026	91	L1 91/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
Metabolic reprogramming and prognostic insights in molecular landscapes driven by glycolysis in ovarian cancer. PMID 40707588	Sci Rep	2025	77	L1 77/100
Integrated bioinformatics analysis screened the key genes and pathways of idiopathic pulmonary fibrosis. PMID 40280949	Sci Rep	2025	93	L1 93/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis. PMID 39890881	Sci Rep	2025	75	L1 75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma. PMID 39856156	Sci Rep	2025	83	L1 83/100
Exploration of the shared diagnostic genes and molecular mechanism between obesity and atherosclerosis via bioinformatic analysis. PMID 39825072	Sci Rep	2025	76	L1 76/100
Comprehensive analysis of transcriptomics and radiomics revealed the potential of TEDC2 as a diagnostic marker for lung adenocarcinoma. PMID 39553728	PeerJ	2024	80	L1 80/100
Comprehensive data for studying serum exosome microRNA transcriptome in Parkinson's disease patients. PMID 39406833	Sci Data	2024	100	L1 100/100
Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs. PMID 38594607	Genet Sel Evol	2024	100	L1 100/100
Decoding and reconstructing disease relations between dry eye and depression: a multimodal investigation comprising meta-analysis, genetic pathways and Mendelia PMID 38548265	J Adv Res	2024	79	L1 79/100
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method. PMID 38247911	Bioengineering (Basel)	2023	75	L1 75/100
Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer. PMID 38066424	BMC Bioinformatics	2023	83	L1 83/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. PMID 37995291	Bioinformatics	2023	79	L1 79/100
Exploring microproteins from various model organisms using the mip-mining database. PMID 37919660	BMC Genomics	2023	85	L1 85/100
Identification of a novel lncRNA prognostic signature and analysis of functional lncRNA AC115619.1 in hepatocellular carcinoma. PMID 37614318	Front Pharmacol	2023	87	L1 87/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network. PMID 36855106	BMC Med Genomics	2023	86	L2 86/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque PMID 36681937	Brief Bioinform	2023	94	L1 94/100
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle. PMID 36057548	Genet Sel Evol	2022	90	L1 90/100
Integrated Analysis of Multiple Microarrays Based on Raw Data Identified Novel Gene Signatures in Recurrent Implantation Failure. PMID 35197930	Front Endocrinol (Lausanne)	2022	85	L1 85/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
FEM: mining biological meaning from cell level in single-cell RNA sequencing data. PMID 34909283	PeerJ	2021	75	L1 75/100
Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning. PMID 34575658	J Pers Med	2021	86	L1 86/100
Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods. PMID 34143800	PLoS One	2021	75	L1 75/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality. PMID 32681306	Curr Genet	2020	81	L1 81/100
Integrated omics in Drosophila uncover a circadian kinome. PMID 32483184	Nat Commun	2020	98	L1 98/100
A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. PMID 32111252	Genome Med	2020	91	L1 91/100
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. PMID 30744683	Genome Biol	2019	97	L1 97/100
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye. PMID 30010758	Gigascience	2018	91	L1 91/100
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID 27867804	Biosci Microbiota Food Health	2016	89	L1 89/100
Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case. PMID 26286638	Sci Rep	2015	76	L1 76/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100