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39 matching publication(s)

Publication	Journal	Year	Score	Verdict
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing. PMID 38877886	Brief Bioinform	2024	90	L1 90/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Wireless sensor network design with reliable and long network lifetime. PMID 41981015	Sci Rep	2026	65	L1 65/100
Machine learning and free energy clustering reveal PAH protein binding linked to AD risk. PMID 41953002	iScience	2026	78	L1 78/100
Machine learning-based DNA microarray analysis for disease detection using the MICRO-AI framework. ⚑ PMID 41925147	Sci Prog	2026	22	L2 22/100 ⚑
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images. PMID 41692960	Bioinformatics	2026	75	L1 75/100
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases. PMID 41719583	Database (Oxford)	2026	50	L1 50/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm. ⚑ PMID 41499218	Brief Bioinform	2026	53	L1 53/100 ⚑
Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data. PMID 41458999	Front Bioinform	2025	64	L1 64/100
DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction. PMID 41417875	PLoS Comput Biol	2025	—	L1 No data access
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues. PMID 41298871	Nat Cell Biol	2025	100	L1 100/100
Single-cell RNA-sequencing of circulating tumour cells: A practical guide to workflow and translational applications. PMID 41053409	Cancer Metastasis Rev	2025	—	L1 No computation
Tracing truth: dynamic temporal networks for multi-modal fake news detection. ⚑ PMID 40989433	PeerJ Comput Sci	2025	33	L1 33/100 ⚑
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. PMID 40926267	Genome Biol	2025	99	L1 99/100
Enhanced Generalizability of RNA Secondary Structure Prediction via Convolutional Block Attention Network and Ensemble Learning. PMID 40871599	Molecules	2025	87	L1 87/100
Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway. PMID 40699865	Curr Issues Mol Biol	2025	—	L1 No data access
scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification. PMID 40501071	Brief Bioinform	2025	62	L1 62/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering. PMID 40131310	Brief Bioinform	2025	85	L1 85/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis. PMID 39890881	Sci Rep	2025	75	L1 75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma. PMID 39856156	Sci Rep	2025	83	L1 83/100
A platelet-related signature for predicting the prognosis and immunotherapy benefit in bladder cancer based on machine learning combinations. ⚑ PMID 39280688	Transl Androl Urol	2024	51	L1 51/100 ⚑
Reducing language barriers, promoting information absorption, and communication using fanyi. PMID 39039634	Chin Med J (Engl)	2024	67	L1 67/100
Analytical code sharing practices in biomedical research. PMID 38983240	PeerJ Comput Sci	2024	92	L1 92/100
Detecting tipping points of complex diseases by network information entropy. PMID 38960408	Brief Bioinform	2024	78	L1 78/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images. PMID 38539106	BMC Bioinformatics	2024	77	L1 77/100
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method. PMID 38247911	Bioengineering (Basel)	2023	75	L1 75/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. PMID 37995291	Bioinformatics	2023	79	L1 79/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. PMID 37847658	Bioinformatics	2023	67	L1 67/100
Graph Random Forest: A Graph Embedded Algorithm for Identifying Highly Connected Important Features. PMID 37509188	Biomolecules	2023	89	L1 89/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. PMID 37478378	Brief Bioinform	2023	60	L1 60/100
A global database for modeling tumor-immune cell communication. PMID 37438390	Sci Data	2023	66	L1 66/100
Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models. PMID 34858485	Front Genet	2021	62	L1 62/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx. PMID 34254998	Brief Bioinform	2021	79	L1 79/100
Colorectal Cancer Prediction Based on Weighted Gene Co-Expression Network Analysis and Variational Auto-Encoder. ⚑ PMID 32825264	Biomolecules	2020	80	L1 80/100 ⚑
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
MZPAQ: a FASTQ data compression tool. PMID 31171931	Source Code Biol Med	2019	58	L1 58/100
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID 27867804	Biosci Microbiota Food Health	2016	89	L1 89/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100