Publications 86 Datasets 392.5k Experiments 5.3k

Explore

86 matching publication(s)

Publication	Journal	Year	Score	Verdict
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Spns1-dependent endocardial lysosomal function drives valve morphogenesis through Notch1-signaling. PMID 39720516	iScience	2024	78	L1 78/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation. PMID 39549198	Geroscience	2024	54	L1 54/100
Taxonomic and functional metagenomic assessment of a Dolichospermum bloom in a large and deep lake south of the Alps. PMID 39227168	FEMS Microbiol Ecol	2024	83	L1 83/100
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
Integrated drug resistance and leukemic stemness gene-expression scores predict outcomes in large cohort of over 3500 AML patients from 10 trials. PMID 39090192	NPJ Precis Oncol	2024	50	L1 50/100
Mapping the Development of Human Spermatogenesis Using Transcriptomics-Based Data: A Scoping Review. PMID 39000031	Int J Mol Sci	2024	—	L1 No computation
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin PMID 38860884	Microb Genom	2024	75	L1 75/100
Involvement of N4BP2L1, PLEKHA4, and BEGAIN genes in breast cancer and muscle cell development. PMID 38859961	Front Cell Dev Biol	2024	73	L1 73/100
Uncertainty in the mating strategy of honeybees causes bias and unreliability in the estimates of genetic parameters. PMID 38632535	Genet Sel Evol	2024	98	L1 98/100
Why an integrated view of gene expression studies on hematopoiesis in mouse aging is better than the sum of their parts. PMID 38627103	FEBS Lett	2024	75	L1 75/100
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy. PMID 38352867	Front Immunol	2024	73	L1 73/100
The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary PMID 38245722	BMC Genomics	2024	100	L1 100/100
Mutually exclusive teams-like patterns of gene regulation characterize phenotypic heterogeneity along the noradrenergic-mesenchymal axis in neuroblastoma. PMID 38230570	Cancer Biol Ther	2024	87	L1 87/100
Natural clines and human management impact the genetic structure of Algerian honey bee populations. PMID 38114899	Genet Sel Evol	2023	55	L1 55/100
High DNA methylation age deceleration defines an aggressive phenotype with immunoexclusion environments in endometrial carcinoma. PMID 37388735	Front Immunol	2023	76	L1 76/100
FAM3C/ILEI protein is elevated in psoriatic lesions and triggers psoriasiform hyperproliferation in mice. PMID 37226685	EMBO Mol Med	2023	83	L1 83/100
Clustering and machine learning-based integration identify cancer associated fibroblasts genes' signature in head and neck squamous cell carcinoma. PMID 37065499	Front Genet	2023	63	L1 63/100
Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver PMID 36864379	Genet Sel Evol	2023	100	L2 100/100
Gene Regulatory Interactions at Lamina-Associated Domains. ⚑ PMID 36833261	Genes (Basel)	2023	31	L1 31/100 ⚑
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis. ⚑ PMID 36725967	Sci Rep	2023	74	L1 74/100 ⚑
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
Assessing Bos taurus introgression in the UOA Bos indicus assembly. PMID 34922445	Genet Sel Evol	2021	86	L1 86/100
Vascular adhesion protein-1 defines a unique subpopulation of human hematopoietic stem cells and regulates their proliferation. PMID 34719737	Cell Mol Life Sci	2021	50	L1 50/100
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA PMID 34547062	Vavilovskii Zhurnal Genet Selektsii	2021	62	L1 62/100
Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu PMID 34056582	Front Artif Intell	2021	92	L1 92/100
Estimation of peptide elongation times from ribosome profiling spectra. PMID 33885812	Nucleic Acids Res	2021	76	L1 76/100
An OMICs-based meta-analysis to support infection state stratification. PMID 33560295	Bioinformatics	2021	44	L1 44/100
Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials. PMID 33558569	Sci Data	2021	94	L1 94/100
Symbiosis genes show a unique pattern of introgression and selection within a Rhizobium leguminosarum species complex. PMID 32176601	Microb Genom	2020	79	L1 79/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis. PMID 30698691	Gigascience	2019	82	L1 82/100
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. ⚑ PMID 30691411	BMC Bioinformatics	2019	30	L1 30/100 ⚑
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100
A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a. PMID 28642491	Sci Rep	2017	76	L1 76/100
Representing and querying disease networks using graph databases. PMID 27462371	BioData Min	2016	77	L1 77/100
Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring. PMID 42038409	NAR Genom Bioinform	2026	78	L1 78/100