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33 matching publication(s)

Publication	Journal	Year	Score	Verdict
TEMP: a computational method for analyzing transposable element polymorphism in populations. PMID 24753423	Nucleic Acids Res	2014	61	L1 61/100
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. ⚑ PMID 25506420	F1000Res	2013	42	L1 42/100 ⚑
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. PMID 24555103	F1000Res	2013	71	L1 71/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. PMID 40926267	Genome Biol	2025	99	L1 99/100
Interpretable and integrative analysis of single-cell multiomics with scMKL. PMID 40770488	Commun Biol	2025	65	L1 65/100
Dynamic interaction of MYC enhancer RNA with YEATS2 protein regulates MYC gene transcription in pancreatic cancer. PMID 40216980	EMBO Rep	2025	90	90/100
Identification and validation of a metabolic-related gene risk model predicting the prognosis of lung, colon, and breast cancers. PMID 39779736	Sci Rep	2025	74	L1 74/100
Increased prevalence of hybrid epithelial/mesenchymal state and enhanced phenotypic heterogeneity in basal breast cancer. PMID 38974967	iScience	2024	95	95/100
Analytical code sharing practices in biomedical research. PMID 38983240	PeerJ Comput Sci	2024	92	L1 92/100
Proneural-mesenchymal antagonism dominates the patterns of phenotypic heterogeneity in glioblastoma. PMID 38433919	iScience	2024	100	L1 100/100
Mutually exclusive teams-like patterns of gene regulation characterize phenotypic heterogeneity along the noradrenergic-mesenchymal axis in neuroblastoma. PMID 38230570	Cancer Biol Ther	2024	87	L1 87/100
Fatty acid synthesis suppresses dietary polyunsaturated fatty acid use PMID 38167725	Nature Communications	2024	94	L1 94/100
A systems-level analysis of the mutually antagonistic roles of RKIP and BACH1 in dynamics of cancer cell plasticity. PMID 37963558	J R Soc Interface	2023	95	95/100
Application of Machine Learning in Predicting Hepatic Metastasis or Primary Site in Gastroenteropancreatic Neuroendocrine Tumors. ⚑ PMID 37887568	Curr Oncol	2023	59	L1 59/100 ⚑
Identification of herpesvirus transcripts from genomic regions around the replication origins. PMID 37773348	Sci Rep	2023	59	L1 59/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer. PMID 36851919	Comput Struct Biotechnol J	2023	78	L2 78/100
Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants. PMID 36525344	STAR Protoc	2022	96	L1 96/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. PMID 36262335	F1000Res	2022	59	L1 59/100
iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data. PMID 35899080	NAR Genom Bioinform	2022	58	L1 58/100
Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition. ⚑ PMID 35819852	J Clin Invest	2022	68	L1 68/100 ⚑
Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae. PMID 35605195	Plant Commun	2022	95	L1 95/100
The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible. PMID 35138128	mSphere	2022	90	L1 90/100
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
Epigenetic loss of heterogeneity from low to high grade localized prostate tumours. PMID 34911933	Nat Commun	2021	79	L1 79/100
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics. ⚑ PMID 34805989	NAR Genom Bioinform	2021	54	L1 54/100 ⚑
miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles. PMID 34637468	PLoS One	2021	100	L1 100/100
A mechanistic model captures the emergence and implications of non-genetic heterogeneity and reversible drug resistance in ER+ breast cancer cells. PMID 34316714	NAR Cancer	2021	85	85/100
Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress ⚑ PMID 34089405	Rice (N Y)	2021	43	L1 43/100 ⚑
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
Meta-analysis of gene expression profiles of lean and obese PCOS to identify differentially regulated pathways and risk of comorbidities. PMID 32695266	Comput Struct Biotechnol J	2020	78	L1 78/100
Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarra PMID 29157210	BMC Plant Biol	2017	91	L1 91/100
A Deluge of Complex Repeats: The Solanum Genome. PMID 26241045	PLoS One	2015	94	L1 94/100