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Unlocking the microbial studies through computational approaches: how far have we reached?
PMID 36920617 · Environ Sci Pollut Res Int · 2023
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No computation
Insights into the differentiation and adaptation within Circaeasteraceae from Circaeaster agrestis genome sequencing and resequencing.⚑
PMID 36895650 · iScience · 2023
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49/100
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Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
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89/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
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78/100
Evaluating native-like structures of RNA-protein complexes through the deep learning method.
PMID 36828844 · Nat Commun · 2023
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67/100
Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
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88/100
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
PMID 36828587 · Genome Res · 2023
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No computation
polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies.
PMID 36792366 · Genome Biol Evol · 2023
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71/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
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89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
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88/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
PMID 36719906 · PLoS Comput Biol · 2023
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98/100
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
PMID 36721781 · PeerJ · 2023
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50/100
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
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78/100
High-resolution metagenomic reconstruction of the freshwater spring bloom.
PMID 36698172 · Microbiome · 2023
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69/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution.
PMID 36696508 · Sci Adv · 2023
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50/100
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.
PMID 36694043 · Commun Biol · 2023
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83/100
Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
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71/100
Population Genomic Analyses Suggest a Hybrid Origin, Cryptic Sexuality, and Decay of Genes Regulating Seed Development for the Putatively Strictly Asexual Ki⚑
PMID 36674965 · Int J Mol Sci · 2023
51/100
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Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori
PMID 36645269 · Microbiol Spectr · 2023
93/100
The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2.
PMID 36627412 · Cell Mol Life Sci · 2023
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59/100
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning.⚑
PMID 36611079 · NPJ Precis Oncol · 2023
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No data access
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Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy.
PMID 36596305 · Cell Host Microbe · 2023
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80/100
Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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89/100
Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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100/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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67/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
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99/100
Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease.
PMID 36518809 · Comput Intell Neurosci · 2022
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74/100
Ten simple rules and a template for creating workflows-as-applications.
PMID 36520686 · PLoS Comput Biol · 2022
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No computation
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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93/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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70/100
Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.
PMID 36450262 · Cell Rep · 2022
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50/100
Comprehensive Transcriptome Analysis Reveals Genome-Wide Changes Associated with Endoplasmic Reticulum (ER) Stress in Potato (Solanum tuberosum L.).
PMID 36430273 · Int J Mol Sci · 2022
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62/100
Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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55/100
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Genetic Variants in ARHGEF6 Cause Congenital Anomalies of the Kidneys and Urinary Tract in Humans, Mice, and Frogs.
PMID 36414417 · · 2023
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85/100
What the Phage: a scalable workflow for the identification and analysis of phage sequences.
PMID 36399058 · Gigascience · 2022
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76/100
CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids.
PMID 36396635 · Nat Commun · 2022
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50/100
Inferring a spatial code of cell-cell interactions across a whole animal body.
PMID 36395331 · PLoS Comput Biol · 2022
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90/100
The seeker R package: simplified fetching and processing of transcriptome data.
PMID 36389425 · PeerJ · 2022
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84/100
Genetic architecture of natural variation of cardiac performance from flies to humans.
PMID 36383075 · Elife · 2022
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74/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis.
PMID 36352408 · BMC Biol · 2022
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84/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.
PMID 36350658 · Nucleic Acids Res · 2023
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84/100
Shared and unique phosphoproteomics responses in skeletal muscle from exercise models and in hyperammonemic myotubes.
PMID 36345342 · iScience · 2022
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100/100
Comparative Genomics of Listeria monocytogenes Isolates from Ruminant Listeriosis Cases in the Midwest United States.
PMID 36314928 · Microbiol Spectr · 2022
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91/100
Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi.
PMID 36305682 · G3 (Bethesda) · 2023
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85/100
Single-cell transcriptomics identifies Keap1-Nrf2 regulated collective invasion in a Drosophila tumor model.
PMID 36321803 · Elife · 2022
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72/100
Stromal androgen signaling acts as tumor niches to drive prostatic basal epithelial progenitor-initiated oncogenesis.⚑
PMID 36323713 · Nat Commun · 2022
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63/100
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spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
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53/100
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CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons.
PMID 36262316 · iScience · 2022
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62/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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59/100