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14 matching publication(s)

Publication	Journal	Year	Score	Verdict
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program. PMID 22199257	Nucleic Acids Res	2011	86	L1 86/100
Hobbes: optimized gram-based methods for efficient read alignment. PMID 22199254	Nucleic Acids Res	2011	83	L1 83/100
Accurate chromatin marks peak calling with Omnipeak. PMID 41521664	Nucleic Acids Res	2026	77	L1 77/100
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen. PMID 41505094	Nucleic Acids Res	2026	78	L1 78/100
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes. PMID 37602419	Nucleic Acids Res	2023	77	L1 77/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. PMID 36350658	Nucleic Acids Res	2023	84	L1 84/100
Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch. PMID 35348734	Nucleic Acids Res	2022	91	L1 91/100
Foster thy young: enhanced prediction of orphan genes in assembled genomes. PMID 34928390	Nucleic Acids Res	2022	84	L1 84/100
An archaeal histone-like protein regulates gene expression in response to salt stress. PMID 34883507	Nucleic Acids Res	2021	94	L1 94/100
Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polyme PMID 34551434	Nucleic Acids Res	2021	75	L1 75/100
Prediction of condition-specific regulatory genes using machine learning. PMID 32329779	Nucleic Acids Res	2020	85	L1 85/100
Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding. PMID 28398514	Nucleic Acids Res	2017	77	L1 77/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data. PMID 25805170	Nucleic Acids Res	2015	81	L1 81/100
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID 22064864	Nucleic Acids Res	2011	83	L1 83/100