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27 matching publication(s)

Publication	Journal	Year	Score	Verdict
Single-cell RNA-sequencing of circulating tumour cells: A practical guide to workflow and translational applications. PMID 41053409	Cancer Metastasis Rev	2025	—	L1 No computation
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO. PMID 39569206	Patterns (N Y)	2024	63	L1 63/100
Detecting tipping points of complex diseases by network information entropy. PMID 38960408	Brief Bioinform	2024	78	L1 78/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons. PMID 38012163	Sci Rep	2023	92	L1 92/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. PMID 37995291	Bioinformatics	2023	79	L1 79/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data. PMID 37994351	F1000Res	2023	67	L1 67/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. PMID 37847658	Bioinformatics	2023	67	L1 67/100
Graph Random Forest: A Graph Embedded Algorithm for Identifying Highly Connected Important Features. PMID 37509188	Biomolecules	2023	89	L1 89/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. PMID 37478378	Brief Bioinform	2023	60	L1 60/100
Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester. PMID 37284977	Neuroinformatics	2023	—	L1 No data access
Analyzing biomarker discovery: Estimating the reproducibility of biomarker sets. PMID 35901020	PLoS One	2022	83	L1 83/100
GeMI: interactive interface for transformer-based Genomic Metadata Integration. PMID 35657113	Database (Oxford)	2022	64	L1 64/100
Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a ⚑ PMID 35143511	PLoS One	2022	48	L1 48/100 ⚑
Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models. PMID 34858485	Front Genet	2021	62	L1 62/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. PMID 34001188	Genome Biol	2021	73	L1 73/100
TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining. PMID 33705981	Genomics Proteomics Bioinformatics	2021	79	L1 79/100
Evaluation of classification and forecasting methods on time series gene expression data. PMID 33156855	PLoS One	2020	74	L1 74/100
Colorectal Cancer Prediction Based on Weighted Gene Co-Expression Network Analysis and Variational Auto-Encoder. ⚑ PMID 32825264	Biomolecules	2020	80	L1 80/100 ⚑
An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations. PMID 32425511	Bioinform Biol Insights	2020	84	L1 84/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
A Bayesian approach to accurate and robust signature detection on LINCS L1000 data. PMID 32003771	Bioinformatics	2020	37	L1 37/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0. PMID 31343654	Invest Ophthalmol Vis Sci	2019	94	L1 94/100
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Reusable building blocks in biological systems. PMID 30958230	J R Soc Interface	2018	82	L1 82/100
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data. PMID 29901703	Gigascience	2018	95	L1 95/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100