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103 matching publication(s)
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method.
PMID 38247911 · Bioengineering (Basel) · 2023
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75/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons.
PMID 38012163 · Sci Rep · 2023
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92/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues.
PMID 37995291 · Bioinformatics · 2023
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79/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data.
PMID 37994351 · F1000Res · 2023
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67/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites.
PMID 37847658 · Bioinformatics · 2023
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67/100
Graph Random Forest: A Graph Embedded Algorithm for Identifying Highly Connected Important Features.
PMID 37509188 · Biomolecules · 2023
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89/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
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60/100
A global database for modeling tumor-immune cell communication.
PMID 37438390 · Sci Data · 2023
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66/100
Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester.
PMID 37284977 · Neuroinformatics · 2023
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Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis.⚑
PMID 36725967 · Sci Rep · 2023
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74/100
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Analyzing biomarker discovery: Estimating the reproducibility of biomarker sets.
PMID 35901020 · PLoS One · 2022
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83/100
GeMI: interactive interface for transformer-based Genomic Metadata Integration.
PMID 35657113 · Database (Oxford) · 2022
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64/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
PMID 35193506 · BMC Bioinformatics · 2022
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94/100
Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a⚑
PMID 35143511 · PLoS One · 2022
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48/100
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Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform.
PMID 34927664 · Genet Mol Biol · 2021
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83/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
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50/100
Predicting Bone Metastasis Using Gene Expression-Based Machine Learning Models.
PMID 34858485 · Front Genet · 2021
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62/100
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA
PMID 34547062 · Vavilovskii Zhurnal Genet Selektsii · 2021
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62/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx.
PMID 34254998 · Brief Bioinform · 2021
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79/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses.
PMID 34001188 · Genome Biol · 2021
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73/100
TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
PMID 33705981 · Genomics Proteomics Bioinformatics · 2021
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79/100
Curation of over 10 000 transcriptomic studies to enable data reuse.
PMID 33599246 · Database (Oxford) · 2021
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80/100
Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data.
PMID 33575569 · NAR Genom Bioinform · 2019
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61/100
Evaluation of classification and forecasting methods on time series gene expression data.
PMID 33156855 · PLoS One · 2020
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74/100
Colorectal Cancer Prediction Based on Weighted Gene Co-Expression Network Analysis and Variational Auto-Encoder.⚑
PMID 32825264 · Biomolecules · 2020
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80/100
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An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations.
PMID 32425511 · Bioinform Biol Insights · 2020
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84/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets.
PMID 32256520 · Front Genet · 2020
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50/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion.
PMID 32024856 · Sci Rep · 2020
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59/100
RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment.
PMID 31978147 · PLoS One · 2020
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71/100
A Bayesian approach to accurate and robust signature detection on LINCS L1000 data.
PMID 32003771 · Bioinformatics · 2020
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37/100
Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics.
PMID 31918046 · iScience · 2019
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96/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection.
PMID 31533612 · BMC Bioinformatics · 2019
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69/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0.
PMID 31343654 · Invest Ophthalmol Vis Sci · 2019
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94/100
Wx: a neural network-based feature selection algorithm for transcriptomic data.
PMID 31324856 · Sci Rep · 2019
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50/100
SMAC, a computational system to link literature, biomedical and expression data.
PMID 31324861 · Sci Rep · 2019
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50/100
A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases.
PMID 31290545 · Database (Oxford) · 2019
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62/100
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
PMID 31114675 · F1000Res · 2019
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90/100
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data.
PMID 31110304 · Sci Rep · 2019
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73/100
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
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88/100
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
PMID 30951143 · Database (Oxford) · 2019
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80/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis.
PMID 30698691 · Gigascience · 2019
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82/100
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_.⚑
PMID 30691411 · BMC Bioinformatics · 2019
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30/100
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miRge 2.0 for comprehensive analysis of microRNA sequencing data.
PMID 30153801 · BMC Bioinformatics · 2018
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89/100
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.
PMID 29901703 · Gigascience · 2018
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95/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data.
PMID 29538618 · Bioinformatics · 2018
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64/100