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198 matching publication(s)
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
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Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network.
PMID 36855106 · BMC Med Genomics · 2023
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86/100
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis.⚑
PMID 36725967 · Sci Rep · 2023
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Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque
PMID 36681937 · Brief Bioinform · 2023
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Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
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71/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
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Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis.
PMID 36352408 · BMC Biol · 2022
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84/100
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
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53/100
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Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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90/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
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Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
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Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data.
PMID 35473573 · Genome Biol · 2022
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Identification of phenotype-specific networks from paired gene expression-cell shape imaging data.
PMID 35197309 · Genome Res · 2022
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100/100
Integrated Analysis of Multiple Microarrays Based on Raw Data Identified Novel Gene Signatures in Recurrent Implantation Failure.
PMID 35197930 · Front Endocrinol (Lausanne) · 2022
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Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a⚑
PMID 35143511 · PLoS One · 2022
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48/100
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer.
PMID 35047825 · NAR Cancer · 2022
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Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
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50/100
FEM: mining biological meaning from cell level in single-cell RNA sequencing data.
PMID 34909283 · PeerJ · 2021
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75/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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Molecular Classification Models for Triple Negative Breast Cancer Subtype Using Machine Learning.
PMID 34575658 · J Pers Med · 2021
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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
PMID 34561431 · Nat Commun · 2021
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100/100
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA
PMID 34547062 · Vavilovskii Zhurnal Genet Selektsii · 2021
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Weighted gene co-expression network analysis reveals that CXCL10, IRF7, MX1, RSAD2, and STAT1 are related to the chronic stage of spinal cord injury.⚑
PMID 34532385 · Ann Transl Med · 2021
44/100
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A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
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Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis.⚑
PMID 34335581 · Front Immunol · 2021
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Identification and analysis of genes associated with epithelial ovarian cancer by integrated bioinformatics methods.
PMID 34143800 · PLoS One · 2021
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Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies.
PMID 34107850 · Bioengineered · 2021
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PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
PMID 34019643 · Nucleic Acids Res · 2021
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82/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses.
PMID 34001188 · Genome Biol · 2021
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73/100
Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer.
PMID 33729159 · Elife · 2021
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Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data.
PMID 33746712 · Front Mol Neurosci · 2021
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TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
PMID 33705981 · Genomics Proteomics Bioinformatics · 2021
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An OMICs-based meta-analysis to support infection state stratification.
PMID 33560295 · Bioinformatics · 2021
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Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening.
PMID 33397809 · Proc Natl Acad Sci U S A · 2021
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Qualitative Transcriptional Signature for the Pathological Diagnosis of Pancreatic Cancer.
PMID 33173782 · Front Mol Biosci · 2020
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A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.⚑
PMID 32718933 · G3 (Bethesda) · 2020
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Comparing the utility of in vivo transposon mutagenesis approaches in yeast species to infer gene essentiality.
PMID 32681306 · Curr Genet · 2020
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A crowdsourced set of curated structural variants for the human genome.
PMID 32559231 · PLoS Comput Biol · 2020
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Prediction of Antimicrobial Resistance in Gram-Negative Bacteria From Whole-Genome Sequencing Data.
PMID 32528441 · Front Microbiol · 2020
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Integrated omics in Drosophila uncover a circadian kinome.
PMID 32483184 · Nat Commun · 2020
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An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations.
PMID 32425511 · Bioinform Biol Insights · 2020
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miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
PMID 32374865 · Nucleic Acids Res · 2020
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The liver as an immunological barrier redefined by single-cell analysis.
PMID 32176810 · Immunology · 2020
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A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles.
PMID 32111252 · Genome Med · 2020
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