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198 matching publication(s)
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments.⚑
PMID 32093613 · BMC Genomics · 2020
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62/100
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Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community.⚑
PMID 32019831 · mSystems · 2020
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57/100
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Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity.
PMID 31980607 · Nat Commun · 2020
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52/100
All of gene expression (AOE): An integrated index for public gene expression databases.⚑
PMID 31978081 · PLoS One · 2020
not yet assessed
Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel.
PMID 31913291 · Sci Data · 2020
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89/100
PulmonDB: a curated lung disease gene expression database.⚑
PMID 31949184 · Sci Rep · 2020
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53/100
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Computational modeling demonstrates that glioblastoma cells can survive spatial environmental challenges through exploratory adaptation.
PMID 31836713 · Nat Commun · 2019
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100/100
RADAR: differential analysis of MeRIP-seq data with a random effect model.⚑
PMID 31870409 · Genome Biol · 2019
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10/100
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mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
PMID 31799603 · Nucleic Acids Res · 2020
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89/100
Structure of the intergenic spacers in chicken ribosomal DNA.
PMID 31655542 · Genet Sel Evol · 2019
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80/100
Contribution of retrotransposition to developmental disorders.
PMID 31604926 · Nat Commun · 2019
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79/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.
PMID 31492853 · Nat Commun · 2019
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77/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0.
PMID 31343654 · Invest Ophthalmol Vis Sci · 2019
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94/100
Wx: a neural network-based feature selection algorithm for transcriptomic data.
PMID 31324856 · Sci Rep · 2019
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50/100
Comparing time series transcriptome data between plants using a network module finding algorithm.
PMID 31164912 · Plant Methods · 2019
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59/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.
PMID 31114926 · Nucleic Acids Res · 2019
not yet assessed
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
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88/100
Accurate sequence variant genotyping in cattle using variation-aware genome graphs.⚑
PMID 31092189 · Genet Sel Evol · 2019
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45/100
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PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
PMID 30951143 · Database (Oxford) · 2019
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80/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models.
PMID 30917778 · BMC Bioinformatics · 2019
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70/100
RNA structure maps across mammalian cellular compartments.⚑
PMID 30886404 · Nat Struct Mol Biol · 2019
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45/100
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CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing.
PMID 30744683 · Genome Biol · 2019
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97/100
Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus.
PMID 30303955 · PLoS Negl Trop Dis · 2018
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94/100
miRge 2.0 for comprehensive analysis of microRNA sequencing data.
PMID 30153801 · BMC Bioinformatics · 2018
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89/100
Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells.
PMID 29921844 · Nat Commun · 2018
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96/100
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.
PMID 30010758 · Gigascience · 2018
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91/100
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.
PMID 29901703 · Gigascience · 2018
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95/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.
PMID 29783948 · BMC Genomics · 2018
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85/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data.
PMID 29538618 · Bioinformatics · 2018
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64/100
De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform.⚑
PMID 29451882 · PLoS One · 2018
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45/100
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Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
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68/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples.⚑
PMID 29221171 · Oncotarget · 2017
73/100
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Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.
PMID 29123534 · Front Plant Sci · 2017
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100/100
Genome-wide prediction of DNase I hypersensitivity using gene expression.
PMID 29051481 · Nat Commun · 2017
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79/100
A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a.
PMID 28642491 · Sci Rep · 2017
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76/100
Cell fixation and preservation for droplet-based single-cell transcriptomics.
PMID 28526029 · BMC Biol · 2017
L1
91/100
Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
PMID 28398514 · Nucleic Acids Res · 2017
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77/100
DFAST and DAGA: web-based integrated genome annotation tools and resources.
PMID 27867804 · Biosci Microbiota Food Health · 2016
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89/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study.
PMID 27583132 · F1000Res · 2016
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74/100
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.
PMID 27082953 · PLoS Comput Biol · 2016
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88/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility.
PMID 26969729 · Mol Syst Biol · 2016
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67/100
Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case.
PMID 26286638 · Sci Rep · 2015
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76/100
Conservation and losses of non-coding RNAs in avian genomes.
PMID 25822729 · PLoS One · 2015
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100/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data.
PMID 25805170 · Nucleic Acids Res · 2015
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81/100