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32 matching publication(s)

Publication	Journal	Year	Score	Verdict
RNA-sequence analysis of primary alveolar macrophages after in vitro infection with porcine reproductive and respiratory syndrome virus strains of differing vir ⚑ PMID 24643046	PLoS One	2014	41	41/100 ⚑
Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling. PMID 25520726	Front Plant Sci	2014	93	93/100
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence. PMID 24558256	Genome Biol Evol	2014	50	50/100
A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome. PMID 25009556	Front Genet	2014	67	67/100
Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection. PMID 25057820	PLoS Genet	2014	78	L1 78/100
Bayesian transcriptome assembly. PMID 25367074	Genome Biol	2014	68	L1 68/100
Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group. ⚑ PMID 25273863	G3 (Bethesda)	2014	58	L1 58/100 ⚑
TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity. PMID 25391375	Genome Res	2014	80	L1 80/100
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. PMID 25122667	G3 (Bethesda)	2014	50	L1 50/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization. PMID 25254103	F1000Res	2014	76	L1 76/100
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. PMID 25202605	Appl Plant Sci	2014	87	L1 87/100
OptiType: precision HLA typing from next-generation sequencing data. PMID 25143287	Bioinformatics	2014	95	L1 95/100
A comparative study of techniques for differential expression analysis on RNA-Seq data. PMID 25119138	PLoS One	2014	58	L1 58/100
Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function. PMID 24885615	BMC Genomics	2014	50	L1 50/100
High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface. PMID 25122613	Genome Res	2014	87	L1 87/100
Comprehensive transcriptome study to develop molecular resources of the copepod Calanus sinicus for their potential ecological applications. ⚑ PMID 24982883	Biomed Res Int	2014	61	L1 61/100 ⚑
Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain. PMID 24992200	PLoS Pathog	2014	63	L1 63/100
RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells. PMID 24926665	PLoS One	2014	87	L1 87/100
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling. PMID 24888378	BMC Genomics	2014	77	L1 77/100
Minimal metabolic pathway structure is consistent with associated biomolecular interactions. PMID 24987116	Mol Syst Biol	2014	30	L1 30/100
TEMP: a computational method for analyzing transposable element polymorphism in populations. PMID 24753423	Nucleic Acids Res	2014	61	L1 61/100
Nucleosome regulatory dynamics in response to TGFβ. PMID 24771338	Nucleic Acids Res	2014	59	L1 59/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations. PMID 24782521	Nucleic Acids Res	2014	79	L1 79/100
Metatranscriptomics of the human oral microbiome during health and disease. PMID 24692635	mBio	2014	62	L1 62/100
The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.). PMID 24598808	PLoS One	2014	58	L1 58/100
Rbfox2 controls autoregulation in RNA-binding protein networks. ⚑ PMID 24637117	Genes Dev	2014	48	L1 48/100 ⚑
Polyploidy and the petal transcriptome of Gossypium. PMID 24393201	BMC Plant Biol	2014	51	L1 51/100
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data. PMID 24747190	Genomics Proteomics Bioinformatics	2014	90	L1 90/100
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq. PMID 24709818	Genome Res	2014	68	L1 68/100
Transcriptome analysis reveals differential splicing events in IPF lung tissue. PMID 24647608	PLoS One	2014	81	L1 81/100
HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis. PMID 24475057	PLoS One	2014	66	L1 66/100
Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color. PMID 24400075	PLoS One	2014	74	L1 74/100